Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Herpetosiphon aurantiacus ATCC 23779

Reference regulog properties
Source regulog: LexA - Chloroflexia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Chloroflexi
Propagated regulon:
Target genome Herpetosiphon aurantiacus ATCC 23779
Orthologous TF(s) Haur_0151
Regulated genes 9
Built upon 52 sites [see more]
Predicted regulatory interactions in Herpetosiphon aurantiacus ATCC 23779
Locus tag Position Score Sequence
Position: -92
Score: 4
Sequence: ATGAACAAATGTTCGA
Locus tag: Haur_0069
Haur_0069 -92 4 ATGAACAAATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: polA
Ortholog function: DNA polymerase I (EC 2.7.7.7)
Chloroflexus aggregans DSM 9485 Cagg_3590 -207 4.3 GAGCACATTCGTGCGC
Chloroflexus sp. Y-400-fl Chy400_0368 -30 4.6 TAGCAAATCTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_0069 -92 4 ATGAACAAATGTTCGA
Position: -37
Score: 4
Sequence: GCGACCGTCTGTGCTA
Locus tag: Haur_2295
Haur_2295 -37 4 GCGACCGTCTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvB
Ortholog function: Holliday junction DNA helicase RuvB
Chloroflexus aggregans DSM 9485 Cagg_0868 -37 4.8 GCGTACACCTGTGCGA
Chloroflexus sp. Y-400-fl Chy400_3332 -37 4.8 GCGTACACCTGTGCGA
Roseiflexus castenholzii DSM 13941 Rcas_3053 -24 4.7 CCGCACACGTGTGCGG
Roseiflexus sp. RS-1 RoseRS_2425 -24 4.7 CCGCACACGTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_2295 -37 4 GCGACCGTCTGTGCTA
Position: -76
Score: 4.3
Sequence: TAGCTCATTTATGCTA
Locus tag: Haur_2999
Haur_2999 -76 4.3 TAGCTCATTTATGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutL
Ortholog function: DNA mismatch repair protein MutL
Roseiflexus castenholzii DSM 13941 Rcas_0100 -33 4.3 TCGCATACGTGTTCGT
Roseiflexus sp. RS-1 RoseRS_4548 -34 4.4 TCGCATACGTGTTCGC
Herpetosiphon aurantiacus ATCC 23779 Haur_2999 -76 4.3 TAGCTCATTTATGCTA
Position: -35
Score: 4.3
Sequence: TAGCAAATTTGTACGC
Locus tag: Haur_3179
Haur_3179 -35 4.3 TAGCAAATTTGTACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbcC
Ortholog function: Exonuclease SbcC
Roseiflexus castenholzii DSM 13941 Rcas_4093 -32 4.1 GCGCGCATCTGTTCGA
Roseiflexus sp. RS-1 RoseRS_0905 -34 4.2 ACGCGCATCTGTTCGA
Herpetosiphon aurantiacus ATCC 23779 Haur_3179 -35 4.3 TAGCAAATTTGTACGC
Position: -58
Score: 4
Sequence: CAGAATAGGTGTGCTA
Locus tag: Haur_3186
Haur_3186 -58 4 CAGAATAGGTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: parB
Ortholog function: Chromosome partitioning protein ParB
Chloroflexus aggregans DSM 9485 Cagg_0177 -73 4.6 TGGTACACTTGTTCGG
Chloroflexus sp. Y-400-fl Chy400_2955 -74 4.5 TGGCACAATTGTTCGG
Roseiflexus castenholzii DSM 13941 Rcas_2543 -83 4.6 CCGAACATCTGTACTG
Roseiflexus sp. RS-1 RoseRS_2821 -40 4.6 CCGAACACCTGTGCAG
Herpetosiphon aurantiacus ATCC 23779 Haur_3186 -58 4 CAGAATAGGTGTGCTA
Position: -82
Score: 4.5
Sequence: TAGCACAGATGTTCAA
Locus tag: Haur_4078
Haur_4078 -82 4.5 TAGCACAGATGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutS
Ortholog function: DNA mismatch repair protein MutS
Herpetosiphon aurantiacus ATCC 23779 Haur_4078 -82 4.5 TAGCACAGATGTTCAA
Position: -91
Score: 4.7
Sequence: ACGAACAAGTGTGCTA
Locus tag: Haur_4194
Haur_4194 -91 4.7 ACGAACAAGTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Chloroflexus aggregans DSM 9485 Cagg_1747 -126 5.1 TCGTACACTTGTGCTA
-107 4.8 TAGCACATATGTACGG
Chloroflexus sp. Y-400-fl Chy400_1482 -126 5.3 TCGCACACCTGTGCTA
-107 4.8 TAGCACATATGTACGG
Roseiflexus castenholzii DSM 13941 Rcas_2960 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Roseiflexus sp. RS-1 RoseRS_3118 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4194 -91 4.7 ACGAACAAGTGTGCTA
Position: -166
Score: 4.9
Sequence: TCGAAAATTTGTGCTA
Locus tag: Haur_4373
Haur_4373 -166 4.9 TCGAAAATTTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_3684
Ortholog function: Conserved hypothetical protein
Chloroflexus aggregans DSM 9485 Cagg_3684 -90 5.1 TCGAACATGTGTGCAA
Chloroflexus sp. Y-400-fl Chy400_3255 -85 4.4 TAGAACATATGAACTA
Roseiflexus castenholzii DSM 13941 Rcas_4196 -86 4.3 TCGAACACACGTTCAT
Roseiflexus sp. RS-1 RoseRS_0046 -86 4.1 ACGAACACCCGTTCAC
Herpetosiphon aurantiacus ATCC 23779 Haur_4373 -166 4.9 TCGAAAATTTGTGCTA
Position: -73
Score: 4.4
Sequence: TCGACCGTGTGTGCTA
Locus tag: Haur_4844
Haur_4844 -73 4.4 TCGACCGTGTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftsK
Ortholog function: Cell division protein FtsK
Chloroflexus aggregans DSM 9485 Cagg_2352 -152 4.6 TCGCACAAATATGCTA
Chloroflexus sp. Y-400-fl Chy400_1345 -67 4.6 TCGCACAAATATGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4844 -73 4.4 TCGACCGTGTGTGCTA
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