Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Chloroflexus sp. Y-400-fl

Reference regulog properties
Source regulog: LexA - Chloroflexia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Chloroflexi
Propagated regulon:
Target genome Chloroflexus sp. Y-400-fl
Orthologous TF(s) Chy400_0511
Regulated genes 9
Built upon 52 sites [see more]
Predicted regulatory interactions in Chloroflexus sp. Y-400-fl
Locus tag Position Score Sequence
Position: -101
Score: 4.4
Sequence: ACGAACATTTGTCCTA
Locus tag: Chy400_0262
Chy400_0262 -101 4.4 ACGAACATTTGTCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvdE
Ortholog function: UV damage repair endonuclease-like protein
Chloroflexus aggregans DSM 9485 Cagg_3654 -86 4.8 TCGAACAAATGTACTA
Chloroflexus sp. Y-400-fl Chy400_0262 -101 4.4 ACGAACATTTGTCCTA
Position: -30
Score: 4.6
Sequence: TAGCAAATCTGTGCGG
Locus tag: Chy400_0368
Chy400_0368 -30 4.6 TAGCAAATCTGTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: polA
Ortholog function: DNA polymerase I (EC 2.7.7.7)
Chloroflexus aggregans DSM 9485 Cagg_3590 -207 4.3 GAGCACATTCGTGCGC
Chloroflexus sp. Y-400-fl Chy400_0368 -30 4.6 TAGCAAATCTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_0069 -92 4 ATGAACAAATGTTCGA
Position: -88
Score: 4.6
Sequence: TCGCACAATAGTTCGA
Locus tag: Chy400_0945
Chy400_0945 -88 4.6 TCGCACAATAGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssb
Ortholog function: Single-stranded DNA-binding protein
Chloroflexus aggregans DSM 9485 Cagg_2703 -88 4.5 TAGCACAATAGTTCGA
Chloroflexus sp. Y-400-fl Chy400_0945 -88 4.6 TCGCACAATAGTTCGA
Roseiflexus castenholzii DSM 13941 Rcas_0027 -114 4.3 TGGAACATGCATGCTA
Roseiflexus sp. RS-1 RoseRS_0828 -115 4.3 TGGAACATGCATGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4110 -8 4.7 TAGAATATATGTTCTA
Position: -67
Score: 4.6
Sequence: TCGCACAAATATGCTA
Locus tag: Chy400_1345
Chy400_1345 -67 4.6 TCGCACAAATATGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftsK
Ortholog function: Cell division protein FtsK
Chloroflexus aggregans DSM 9485 Cagg_2352 -152 4.6 TCGCACAAATATGCTA
Chloroflexus sp. Y-400-fl Chy400_1345 -67 4.6 TCGCACAAATATGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4844 -73 4.4 TCGACCGTGTGTGCTA
Position: -126
Score: 5.3
Sequence: TCGCACACCTGTGCTA
Position: -107
Score: 4.8
Sequence: TAGCACATATGTACGG
Locus tag: Chy400_1482
Chy400_1482 -126 5.3 TCGCACACCTGTGCTA
-107 4.8 TAGCACATATGTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Chloroflexus aggregans DSM 9485 Cagg_1747 -126 5.1 TCGTACACTTGTGCTA
-107 4.8 TAGCACATATGTACGG
Chloroflexus sp. Y-400-fl Chy400_1482 -126 5.3 TCGCACACCTGTGCTA
-107 4.8 TAGCACATATGTACGG
Roseiflexus castenholzii DSM 13941 Rcas_2960 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Roseiflexus sp. RS-1 RoseRS_3118 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4194 -91 4.7 ACGAACAAGTGTGCTA
Position: -177
Score: 5.2
Sequence: TAGAACACTTGTTCTA
Locus tag: Chy400_2036
Chy400_2036 -177 5.2 TAGAACACTTGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_1574
Ortholog function: Conserved hypothetical protein
Chloroflexus sp. Y-400-fl Chy400_2036 -177 5.2 TAGAACACTTGTTCTA
Roseiflexus castenholzii DSM 13941 Rcas_2146 -129 4.7 TAGAACACATGTTCTT
Roseiflexus sp. RS-1 RoseRS_3028 -135 4.9 TAGAACAAATGTTCGA
Position: -74
Score: 4.5
Sequence: TGGCACAATTGTTCGG
Locus tag: Chy400_2955
Chy400_2955 -74 4.5 TGGCACAATTGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parB
Ortholog function: Chromosome partitioning protein ParB
Chloroflexus aggregans DSM 9485 Cagg_0177 -73 4.6 TGGTACACTTGTTCGG
Chloroflexus sp. Y-400-fl Chy400_2955 -74 4.5 TGGCACAATTGTTCGG
Roseiflexus castenholzii DSM 13941 Rcas_2543 -83 4.6 CCGAACATCTGTACTG
Roseiflexus sp. RS-1 RoseRS_2821 -40 4.6 CCGAACACCTGTGCAG
Herpetosiphon aurantiacus ATCC 23779 Haur_3186 -58 4 CAGAATAGGTGTGCTA
Position: -85
Score: 4.4
Sequence: TAGAACATATGAACTA
Locus tag: Chy400_3255
Chy400_3255 -85 4.4 TAGAACATATGAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_3684
Ortholog function: Conserved hypothetical protein
Chloroflexus aggregans DSM 9485 Cagg_3684 -90 5.1 TCGAACATGTGTGCAA
Chloroflexus sp. Y-400-fl Chy400_3255 -85 4.4 TAGAACATATGAACTA
Roseiflexus castenholzii DSM 13941 Rcas_4196 -86 4.3 TCGAACACACGTTCAT
Roseiflexus sp. RS-1 RoseRS_0046 -86 4.1 ACGAACACCCGTTCAC
Herpetosiphon aurantiacus ATCC 23779 Haur_4373 -166 4.9 TCGAAAATTTGTGCTA
Position: -37
Score: 4.8
Sequence: GCGTACACCTGTGCGA
Locus tag: Chy400_3332
Chy400_3332 -37 4.8 GCGTACACCTGTGCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvB
Ortholog function: Holliday junction DNA helicase RuvB
Chloroflexus aggregans DSM 9485 Cagg_0868 -37 4.8 GCGTACACCTGTGCGA
Chloroflexus sp. Y-400-fl Chy400_3332 -37 4.8 GCGTACACCTGTGCGA
Roseiflexus castenholzii DSM 13941 Rcas_3053 -24 4.7 CCGCACACGTGTGCGG
Roseiflexus sp. RS-1 RoseRS_2425 -24 4.7 CCGCACACGTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_2295 -37 4 GCGACCGTCTGTGCTA
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