Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Roseiflexus castenholzii DSM 13941

Reference regulog properties
Source regulog: LexA - Chloroflexia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Chloroflexi
Propagated regulon:
Target genome Roseiflexus castenholzii DSM 13941
Orthologous TF(s) Rcas_1071
Regulated genes 11
Built upon 52 sites [see more]
Predicted regulatory interactions in Roseiflexus castenholzii DSM 13941
Locus tag Position Score Sequence
Position: -114
Score: 4.3
Sequence: TGGAACATGCATGCTA
Locus tag: Rcas_0027
Rcas_0027 -114 4.3 TGGAACATGCATGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssb
Ortholog function: Single-stranded DNA-binding protein
Chloroflexus aggregans DSM 9485 Cagg_2703 -88 4.5 TAGCACAATAGTTCGA
Chloroflexus sp. Y-400-fl Chy400_0945 -88 4.6 TCGCACAATAGTTCGA
Roseiflexus castenholzii DSM 13941 Rcas_0027 -114 4.3 TGGAACATGCATGCTA
Roseiflexus sp. RS-1 RoseRS_0828 -115 4.3 TGGAACATGCATGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4110 -8 4.7 TAGAATATATGTTCTA
Position: -33
Score: 4.3
Sequence: TCGCATACGTGTTCGT
Locus tag: Rcas_0100
Rcas_0100 -33 4.3 TCGCATACGTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutL
Ortholog function: DNA mismatch repair protein MutL
Roseiflexus castenholzii DSM 13941 Rcas_0100 -33 4.3 TCGCATACGTGTTCGT
Roseiflexus sp. RS-1 RoseRS_4548 -34 4.4 TCGCATACGTGTTCGC
Herpetosiphon aurantiacus ATCC 23779 Haur_2999 -76 4.3 TAGCTCATTTATGCTA
Position: -129
Score: 4.7
Sequence: TAGAACACATGTTCTT
Locus tag: Rcas_2146
Rcas_2146 -129 4.7 TAGAACACATGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_1574
Ortholog function: Conserved hypothetical protein
Chloroflexus sp. Y-400-fl Chy400_2036 -177 5.2 TAGAACACTTGTTCTA
Roseiflexus castenholzii DSM 13941 Rcas_2146 -129 4.7 TAGAACACATGTTCTT
Roseiflexus sp. RS-1 RoseRS_3028 -135 4.9 TAGAACAAATGTTCGA
Position: -83
Score: 4.6
Sequence: CCGAACATCTGTACTG
Locus tag: Rcas_2543
Rcas_2543 -83 4.6 CCGAACATCTGTACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parB
Ortholog function: Chromosome partitioning protein ParB
Chloroflexus aggregans DSM 9485 Cagg_0177 -73 4.6 TGGTACACTTGTTCGG
Chloroflexus sp. Y-400-fl Chy400_2955 -74 4.5 TGGCACAATTGTTCGG
Roseiflexus castenholzii DSM 13941 Rcas_2543 -83 4.6 CCGAACATCTGTACTG
Roseiflexus sp. RS-1 RoseRS_2821 -40 4.6 CCGAACACCTGTGCAG
Herpetosiphon aurantiacus ATCC 23779 Haur_3186 -58 4 CAGAATAGGTGTGCTA
Position: -137
Score: 5
Sequence: TAGCCCACTTGTGCGA
Locus tag: Rcas_2960
Rcas_2960 -137 5 TAGCCCACTTGTGCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Chloroflexus aggregans DSM 9485 Cagg_1747 -126 5.1 TCGTACACTTGTGCTA
-107 4.8 TAGCACATATGTACGG
Chloroflexus sp. Y-400-fl Chy400_1482 -126 5.3 TCGCACACCTGTGCTA
-107 4.8 TAGCACATATGTACGG
Roseiflexus castenholzii DSM 13941 Rcas_2960 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Roseiflexus sp. RS-1 RoseRS_3118 -137 5 TAGCCCACTTGTGCGA
-120 4.3 AAGAACCTTCGTGCTA
Herpetosiphon aurantiacus ATCC 23779 Haur_4194 -91 4.7 ACGAACAAGTGTGCTA
Position: -24
Score: 4.7
Sequence: CCGCACACGTGTGCGG
Locus tag: Rcas_3053
Rcas_3053 -24 4.7 CCGCACACGTGTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvB
Ortholog function: Holliday junction DNA helicase RuvB
Chloroflexus aggregans DSM 9485 Cagg_0868 -37 4.8 GCGTACACCTGTGCGA
Chloroflexus sp. Y-400-fl Chy400_3332 -37 4.8 GCGTACACCTGTGCGA
Roseiflexus castenholzii DSM 13941 Rcas_3053 -24 4.7 CCGCACACGTGTGCGG
Roseiflexus sp. RS-1 RoseRS_2425 -24 4.7 CCGCACACGTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_2295 -37 4 GCGACCGTCTGTGCTA
Position: -42
Score: 4.7
Sequence: TAGAACATCGGTACGA
Locus tag: Rcas_3531
Rcas_3531 -42 4.7 TAGAACATCGGTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutS
Ortholog function: DNA mismatch repair protein MutS
Roseiflexus castenholzii DSM 13941 Rcas_3531 -42 4.7 TAGAACATCGGTACGA
Roseiflexus sp. RS-1 RoseRS_3706 -47 4.7 TAGAACATCGGTACGA
Position: -32
Score: 4.1
Sequence: GCGCGCATCTGTTCGA
Locus tag: Rcas_4093
Rcas_4093 -32 4.1 GCGCGCATCTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbcC
Ortholog function: Exonuclease SbcC
Roseiflexus castenholzii DSM 13941 Rcas_4093 -32 4.1 GCGCGCATCTGTTCGA
Roseiflexus sp. RS-1 RoseRS_0905 -34 4.2 ACGCGCATCTGTTCGA
Herpetosiphon aurantiacus ATCC 23779 Haur_3179 -35 4.3 TAGCAAATTTGTACGC
Position: -86
Score: 4.3
Sequence: TCGAACACACGTTCAT
Locus tag: Rcas_4196
Rcas_4196 -86 4.3 TCGAACACACGTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_3684
Ortholog function: Conserved hypothetical protein
Chloroflexus aggregans DSM 9485 Cagg_3684 -90 5.1 TCGAACATGTGTGCAA
Chloroflexus sp. Y-400-fl Chy400_3255 -85 4.4 TAGAACATATGAACTA
Roseiflexus castenholzii DSM 13941 Rcas_4196 -86 4.3 TCGAACACACGTTCAT
Roseiflexus sp. RS-1 RoseRS_0046 -86 4.1 ACGAACACCCGTTCAC
Herpetosiphon aurantiacus ATCC 23779 Haur_4373 -166 4.9 TCGAAAATTTGTGCTA
Position: -107
Score: 4.7
Sequence: TCGCACACCTGTTCAC
Locus tag: Rcas_4419
Rcas_4419 -107 4.7 TCGCACACCTGTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Roseiflexus castenholzii DSM 13941 Rcas_4419 -107 4.7 TCGCACACCTGTTCAC
Roseiflexus sp. RS-1 RoseRS_3438 -103 4 TCGCACGTCTGTTCAT
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