Regulog NrdR - Chloroflexia
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Chloroflexi |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Chloroflexi
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 1 | 1 |
| Chloroflexus sp. Y-400-fl | 1 | 1 |
| Roseiflexus sp. RS-1 | 1 | 1 |
| Roseiflexus castenholzii DSM 13941 | 1 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 1 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| nrdJ |
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Roseiflexus sp. RS-1 Site: position = -213 score = 4.389 sequence = GCGCTATATTTAGGAA Gene: RoseRS_4577: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Roseiflexus castenholzii DSM 13941 Site: position = -219 score = 4.18885 sequence = GCGCCATATTTAGGAA Site: position = -334 score = 4.24889 sequence = ATACCGGATTTAGTTC Gene: Rcas_0124: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Herpetosiphon aurantiacus ATCC 23779 Site: position = -326 score = 4.80687 sequence = ATACTATATATTGGAT Gene: Haur_4766: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| CRON 2. | ||||||
| nrdJ2 |
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Chloroflexus aggregans DSM 9485 Site: position = -137 score = 5.12498 sequence = ACACTAGATGTAGTAC Site: position = -282 score = 4.07291 sequence = GTGCTGGATATGGTAA Site: position = -294 score = 4.84815 sequence = ATACCAGATTTGGTGC Gene: Cagg_2767: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Chloroflexus sp. Y-400-fl Site: position = -137 score = 5.40764 sequence = ACACTAGATATAGTAT Gene: Chy400_1894: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |