Regulog NrtR - Chloroflexia
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Chloroflexi |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Chloroflexi
- By trascription factor - NrtR
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 6 | 4 |
| Chloroflexus sp. Y-400-fl | 5 | 4 |
| Herpetosiphon aurantiacus ATCC 23779 | 8 | 4 |
| Roseiflexus castenholzii DSM 13941 | 7 | 4 |
| Roseiflexus sp. RS-1 | 7 | 4 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| nrtR |
*
Chloroflexus aggregans DSM 9485 Site: position = -47 score = 6.02726 sequence = TTAGTGTATTACTAACACTAA Gene: Cagg_0305: Nudix-related transcriptional regulator NrtR |
*
Chloroflexus sp. Y-400-fl Site: position = -47 score = 6.12799 sequence = TTAGTGTATAAATAACACTAA Gene: Chy400_3450: Nudix-related transcriptional regulator NrtR |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -32 score = 5.95704 sequence = TTTGTGTCATAATAACACTAT Gene: Haur_4290: Nudix-related transcriptional regulator NrtR |
*
Roseiflexus castenholzii DSM 13941 Site: position = -70 score = 5.70722 sequence = TTATTGTTGTAATGACACTAA Gene: Rcas_0387: Nudix-related transcriptional regulator NrtR |
*
Roseiflexus sp. RS-1 Site: position = -34 score = 5.53802 sequence = TTATTGTTGCAATGACACTAA Gene: RoseRS_0145: Nudix-related transcriptional regulator NrtR |
Nudix-related transcriptional regulator NrtR |
| nadE |
Gene: Cagg_2533: NAD synthetase (EC 6.3.1.5) |
Gene: Chy400_1498: NAD synthetase (EC 6.3.1.5) |
Gene: Haur_4289: NAD synthetase (EC 6.3.1.5) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -53 score = 6.08075 sequence = AAAGTGTTATACTAACACTAA Gene: Rcas_2204: NAD synthetase (EC 6.3.1.5) |
*
Roseiflexus sp. RS-1 Site: position = -59 score = 5.82895 sequence = AAAGTGTTATACTGACACCAA Gene: RoseRS_2679: NAD synthetase (EC 6.3.1.5) |
NAD synthetase (EC 6.3.1.5) |
| pncA |
*
Chloroflexus aggregans DSM 9485 Site: position = -37 score = 5.68681 sequence = ATAGTGTCAGTTTTACACTAC Gene: Cagg_0030: Nicotinamidase (EC 3.5.1.19) |
*
Chloroflexus sp. Y-400-fl Site: position = -37 score = 5.65367 sequence = ATAGTGTCAGTTTTACACCAA Gene: Chy400_4233: Nicotinamidase (EC 3.5.1.19) |
Gene: Haur_4288: Nicotinamidase (EC 3.5.1.19) |
Gene: Rcas_0388: Nicotinamidase (EC 3.5.1.19) |
Gene: RoseRS_0144: Nicotinamidase (EC 3.5.1.19) |
Nicotinamidase (EC 3.5.1.19) |
| CRON 2. | ||||||
| nadA |
*
Chloroflexus aggregans DSM 9485 Site: position = -35 score = 6.26123 sequence = AAAGTGTAACAATAACACTAA Site: position = -90 score = 5.24197 sequence = TTAGTGACCTCTTGACAATAT Gene: Cagg_1772: Quinolinate synthetase (EC 4.1.99.-) |
*
Chloroflexus sp. Y-400-fl Site: position = -90 score = 5.24197 sequence = TTAGTGACCTCTTGACAATAT Site: position = -36 score = 6.43043 sequence = AAAGTGTAATAATAACACTAA Gene: Chy400_1521: Quinolinate synthetase (EC 4.1.99.-) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -110 score = 5.40396 sequence = ATTGTGTTAGAATGACATTAT Site: position = -49 score = 6.24625 sequence = ATAGTGTCAAAATGACACTTA Site: position = -136 score = 5.53726 sequence = AAATTGTCATCTTGACACTAC Gene: Haur_1289: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Rcas_1004: Quinolinate synthetase (EC 4.1.99.-) |
Gene: RoseRS_0438: Quinolinate synthetase (EC 4.1.99.-) |
Quinolinate synthetase (EC 4.1.99.-) |
| nadB |
Gene: Cagg_1773: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Chy400_1522: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Haur_2309: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Rcas_1003: L-aspartate oxidase (EC 1.4.3.16) |
Gene: RoseRS_0437: L-aspartate oxidase (EC 1.4.3.16) |
L-aspartate oxidase (EC 1.4.3.16) |
| nadC |
Gene: Cagg_1774: Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
Gene: Chy400_0971: Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
Gene: Haur_3382: Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -65 score = 6.15679 sequence = ATAGAGTAACATTGACACTAA Site: position = -11 score = 6.61571 sequence = ATAGTGTAAAAATGACACTAA Gene: Rcas_1005: Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
*
Roseiflexus sp. RS-1 Site: position = -11 score = 6.61571 sequence = ATAGTGTAAAAATGACACTAA Site: position = -65 score = 6.15679 sequence = ATAGAGTAACATTGACACTAA Gene: RoseRS_0439: Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
Quinolinate phosphoribosyltransferase (EC 2.4.2.19) |
| pncB |
*
Chloroflexus aggregans DSM 9485 Site: position = -34 score = 6.10348 sequence = AAAGTGTAATAATTACACTAT Gene: Cagg_0100: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Chloroflexus sp. Y-400-fl Site: position = -35 score = 5.77179 sequence = TTAGTGTATAATTTACACTAT Gene: Chy400_0205: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -54 score = 5.86403 sequence = TTAGTGTATTATAGACACTAA Gene: Haur_3381: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -39 score = 5.84005 sequence = ATAGTGTCAATATCACAATAA Gene: Rcas_1635: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Roseiflexus sp. RS-1 Site: position = -41 score = 6.09506 sequence = ATAGTGTCAATATAACAATAA Gene: RoseRS_1316: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
| nadD |
Gene: Cagg_3085: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -35 score = 5.16465 sequence = TTGGTGTCATATTGACTATTA Site: position = -83 score = 5.67702 sequence = TTAGTGTGATATTGACAAAAA Gene: Haur_2310: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
Gene: Rcas_3366: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
Gene: RoseRS_2217: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |