Draft regulons reconstructed by automated conservative propagation
| Template (reference) regulons | Propagated regulons | |||||
|---|---|---|---|---|---|---|
| Regulog collection | Genomes | TF regulons | Taxonomic group | Genomes | TF regulons | |
| Bacteroidaceae | 11 | 223 | ➠ | Bacteroidaceae | 22 | 254 |
| Genomes | Regulons | Sites | |
|---|---|---|---|
| * | Bacteroides cellulosilyticus DSM 14838 | 18 | 51 |
| * | Bacteroides coprophilus DSM 18228 | 9 | 19 |
| * | Bacteroides dorei DSM 17855 | 19 | 59 |
| * | Bacteroides eggerthii DSM 20697 | 16 | 57 |
| Bacteroides finegoldii DSM 17565 | 19 | 51 | |
| * | Bacteroides fragilis NCTC 9343 | 13 | 56 |
| Bacteroides fragilis YCH46 | 12 | 54 | |
| * | Bacteroides ovatus ATCC 8483 | 27 | 67 |
| * | Bacteroides plebeius DSM 17135 | 20 | 50 |
| * | Bacteroides stercoris ATCC 43183 | 13 | 39 |
| * | Bacteroides thetaiotaomicron VPI-5482 | 34 | 99 |
| * | Bacteroides uniformis ATCC 8492 | 15 | 50 |
| * | Bacteroides vulgatus ATCC 8482 | 19 | 69 |
| Parabacteroides distasonis ATCC 8503 | 4 | 10 | |
| Parabacteroides johnsonii DSM 18315 | 8 | 12 | |
| Parabacteroides merdae ATCC 43184 | 5 | 10 | |
| Prevotella copri DSM 18205 | 2 | 3 | |
| Prevotella ruminicola 23 | 1 | 1 |
| * | - reference regulons from this genome have been used as a template for the conservative propagation |
Genomic distribution of propagated regulons
| Reference regulog | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AraR | - |
2
AraR
Bacteroides cellulosilyticus DSM 14838 |
- |
1
AraR
Bacteroides dorei DSM 17855 |
1
AraR
Bacteroides eggerthii DSM 20697 |
- | - | - |
2
AraR
Bacteroides ovatus ATCC 8483 |
2
AraR
Bacteroides plebeius DSM 17135 |
- |
2
AraR
Bacteroides thetaiotaomicron VPI-5482 |
2
AraR
Bacteroides uniformis ATCC 8492 |
1
AraR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| ArgR | - | - |
1
ArgR
Bacteroides coprophilus DSM 18228 |
1
ArgR
Bacteroides dorei DSM 17855 |
1
ArgR
Bacteroides eggerthii DSM 20697 |
- |
1
ArgR
Bacteroides fragilis NCTC 9343 |
1
ArgR
Bacteroides fragilis YCH46 |
1
ArgR
Bacteroides ovatus ATCC 8483 |
1
ArgR
Bacteroides plebeius DSM 17135 |
1
ArgR
Bacteroides stercoris ATCC 43183 |
1
ArgR
Bacteroides thetaiotaomicron VPI-5482 |
1
ArgR
Bacteroides uniformis ATCC 8492 |
1
ArgR
Bacteroides vulgatus ATCC 8482 |
- | - |
1
ArgR
Parabacteroides johnsonii DSM 18315 |
1
ArgR
Parabacteroides merdae ATCC 43184 |
- | - | - |
1
ArgR
Prevotella ruminicola 23 |
| Crp | - |
10
Crp
Bacteroides cellulosilyticus DSM 14838 |
2
Crp
Bacteroides coprophilus DSM 18228 |
9
Crp
Bacteroides dorei DSM 17855 |
9
Crp
Bacteroides eggerthii DSM 20697 |
9
Crp
Bacteroides finegoldii DSM 17565 |
10
Crp
Bacteroides fragilis NCTC 9343 |
10
Crp
Bacteroides fragilis YCH46 |
5
Crp
Bacteroides ovatus ATCC 8483 |
3
Crp
Bacteroides plebeius DSM 17135 |
9
Crp
Bacteroides stercoris ATCC 43183 |
12
Crp
Bacteroides thetaiotaomicron VPI-5482 |
10
Crp
Bacteroides uniformis ATCC 8492 |
11
Crp
Bacteroides vulgatus ATCC 8482 |
- |
3
Crp
Parabacteroides distasonis ATCC 8503 |
3
Crp
Parabacteroides johnsonii DSM 18315 |
4
Crp
Parabacteroides merdae ATCC 43184 |
- | - |
1
Crp
Prevotella copri DSM 18205 |
- |
| FucR | - |
1
FucR
Bacteroides cellulosilyticus DSM 14838 |
- |
1
FucR
Bacteroides dorei DSM 17855 |
- |
1
FucR
Bacteroides finegoldii DSM 17565 |
2
FucR
Bacteroides fragilis NCTC 9343 |
2
FucR
Bacteroides fragilis YCH46 |
1
FucR
Bacteroides ovatus ATCC 8483 |
1
FucR
Bacteroides plebeius DSM 17135 |
- |
1
FucR
Bacteroides thetaiotaomicron VPI-5482 |
- |
1
FucR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| Fur | - | - |
1
Fur
Bacteroides coprophilus DSM 18228 |
1
Fur
Bacteroides dorei DSM 17855 |
1
Fur
Bacteroides eggerthii DSM 20697 |
1
Fur
Bacteroides finegoldii DSM 17565 |
1
Fur
Bacteroides fragilis NCTC 9343 |
1
Fur
Bacteroides fragilis YCH46 |
- |
1
Fur
Bacteroides plebeius DSM 17135 |
- |
1
Fur
Bacteroides thetaiotaomicron VPI-5482 |
1
Fur
Bacteroides uniformis ATCC 8492 |
1
Fur
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| HTCS_Aga-1 | - | - | - | - | - | - | - | - | - | - | - |
3
HTCS_Aga-1
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Ara-1 | - |
1
HTCS_Ara-1
Bacteroides cellulosilyticus DSM 14838 |
- |
2
HTCS_Ara-1
Bacteroides dorei DSM 17855 |
2
HTCS_Ara-1
Bacteroides eggerthii DSM 20697 |
- | - | - | - |
2
HTCS_Ara-1
Bacteroides plebeius DSM 17135 |
- |
2
HTCS_Ara-1
Bacteroides thetaiotaomicron VPI-5482 |
- |
2
HTCS_Ara-1
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - |
1
HTCS_Ara-1
Prevotella copri DSM 18205 |
- |
| HTCS_Ara-2 | - |
1
HTCS_Ara-2
Bacteroides cellulosilyticus DSM 14838 |
- |
1
HTCS_Ara-2
Bacteroides dorei DSM 17855 |
- |
2
HTCS_Ara-2
Bacteroides finegoldii DSM 17565 |
- | - |
1
HTCS_Ara-2
Bacteroides ovatus ATCC 8483 |
2
HTCS_Ara-2
Bacteroides plebeius DSM 17135 |
- |
3
HTCS_Ara-2
Bacteroides thetaiotaomicron VPI-5482 |
- |
1
HTCS_Ara-2
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| HTCS_Fru | - | - |
1
HTCS_Fru
Bacteroides coprophilus DSM 18228 |
1
HTCS_Fru
Bacteroides dorei DSM 17855 |
- |
2
HTCS_Fru
Bacteroides finegoldii DSM 17565 |
2
HTCS_Fru
Bacteroides fragilis NCTC 9343 |
1
HTCS_Fru
Bacteroides fragilis YCH46 |
3
HTCS_Fru
Bacteroides ovatus ATCC 8483 |
2
HTCS_Fru
Bacteroides plebeius DSM 17135 |
- |
4
HTCS_Fru
Bacteroides thetaiotaomicron VPI-5482 |
2
HTCS_Fru
Bacteroides uniformis ATCC 8492 |
2
HTCS_Fru
Bacteroides vulgatus ATCC 8482 |
- | - |
1
HTCS_Fru
Parabacteroides johnsonii DSM 18315 |
- | - | - | - | - |
| HTCS_Hep | - | - | - | - | - |
1
HTCS_Hep
Bacteroides finegoldii DSM 17565 |
- | - |
3
HTCS_Hep
Bacteroides ovatus ATCC 8483 |
- |
1
HTCS_Hep
Bacteroides stercoris ATCC 43183 |
3
HTCS_Hep
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Hya | - |
2
HTCS_Hya
Bacteroides cellulosilyticus DSM 14838 |
- | - |
2
HTCS_Hya
Bacteroides eggerthii DSM 20697 |
2
HTCS_Hya
Bacteroides finegoldii DSM 17565 |
- | - |
2
HTCS_Hya
Bacteroides ovatus ATCC 8483 |
1
HTCS_Hya
Bacteroides plebeius DSM 17135 |
3
HTCS_Hya
Bacteroides stercoris ATCC 43183 |
2
HTCS_Hya
Bacteroides thetaiotaomicron VPI-5482 |
1
HTCS_Hya
Bacteroides uniformis ATCC 8492 |
- | - | - | - | - | - | - | - | - |
| HTCS_Man-1 | - | - | - | - | - | - | - | - |
1
HTCS_Man-1
Bacteroides ovatus ATCC 8483 |
- | - |
1
HTCS_Man-1
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Man-2 | - | - | - | - | - | - | - | - | - | - | - |
1
HTCS_Man-2
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Man-3 | - |
1
HTCS_Man-3
Bacteroides cellulosilyticus DSM 14838 |
- | - | - | - |
1
HTCS_Man-3
Bacteroides fragilis NCTC 9343 |
- | - | - | - |
4
HTCS_Man-3
Bacteroides thetaiotaomicron VPI-5482 |
1
HTCS_Man-3
Bacteroides uniformis ATCC 8492 |
- | - | - | - | - | - | - | - | - |
| HTCS_Ogl-1 | - | - | - | - | - | - | - | - | - | - | - |
1
HTCS_Ogl-1
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Ogl-2 | - | - | - | - | - | - | - | - | - | - | - |
1
HTCS_Ogl-2
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| HTCS_Pga | - | - | - | - | - |
1
HTCS_Pga
Bacteroides finegoldii DSM 17565 |
- | - |
1
HTCS_Pga
Bacteroides ovatus ATCC 8483 |
- | - | - | - | - | - | - | - | - | - | - | - | - |
| HTCS_Rgu-1 | - |
3
HTCS_Rgu-1
Bacteroides cellulosilyticus DSM 14838 |
- |
4
HTCS_Rgu-1
Bacteroides dorei DSM 17855 |
3
HTCS_Rgu-1
Bacteroides eggerthii DSM 20697 |
3
HTCS_Rgu-1
Bacteroides finegoldii DSM 17565 |
- | - |
2
HTCS_Rgu-1
Bacteroides ovatus ATCC 8483 |
2
HTCS_Rgu-1
Bacteroides plebeius DSM 17135 |
1
HTCS_Rgu-1
Bacteroides stercoris ATCC 43183 |
5
HTCS_Rgu-1
Bacteroides thetaiotaomicron VPI-5482 |
- |
4
HTCS_Rgu-1
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| HTCS_Rgu-2 | - | - | - |
7
HTCS_Rgu-2
Bacteroides dorei DSM 17855 |
- | - | - | - |
6
HTCS_Rgu-2
Bacteroides ovatus ATCC 8483 |
4
HTCS_Rgu-2
Bacteroides plebeius DSM 17135 |
- |
7
HTCS_Rgu-2
Bacteroides thetaiotaomicron VPI-5482 |
- |
8
HTCS_Rgu-2
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| HcpR | - |
2
HcpR
Bacteroides cellulosilyticus DSM 14838 |
3
HcpR
Bacteroides coprophilus DSM 18228 |
2
HcpR
Bacteroides dorei DSM 17855 |
- | - |
2
HcpR
Bacteroides fragilis NCTC 9343 |
2
HcpR
Bacteroides fragilis YCH46 |
1
HcpR
Bacteroides ovatus ATCC 8483 |
3
HcpR
Bacteroides plebeius DSM 17135 |
- |
1
HcpR
Bacteroides thetaiotaomicron VPI-5482 |
2
HcpR
Bacteroides uniformis ATCC 8492 |
2
HcpR
Bacteroides vulgatus ATCC 8482 |
- |
1
HcpR
Parabacteroides distasonis ATCC 8503 |
2
HcpR
Parabacteroides johnsonii DSM 18315 |
- | - | - | - | - |
| KdgR | - |
2
KdgR
Bacteroides cellulosilyticus DSM 14838 |
- |
3
KdgR
Bacteroides dorei DSM 17855 |
2
KdgR
Bacteroides eggerthii DSM 20697 |
4
KdgR
Bacteroides finegoldii DSM 17565 |
4
KdgR
Bacteroides fragilis NCTC 9343 |
4
KdgR
Bacteroides fragilis YCH46 |
2
KdgR
Bacteroides ovatus ATCC 8483 |
1
KdgR
Bacteroides plebeius DSM 17135 |
1
KdgR
Bacteroides stercoris ATCC 43183 |
4
KdgR
Bacteroides thetaiotaomicron VPI-5482 |
3
KdgR
Bacteroides uniformis ATCC 8492 |
4
KdgR
Bacteroides vulgatus ATCC 8482 |
- | - |
1
KdgR
Parabacteroides johnsonii DSM 18315 |
1
KdgR
Parabacteroides merdae ATCC 43184 |
- | - | - | - |
| LgoR | - |
3
LgoR
Bacteroides cellulosilyticus DSM 14838 |
- |
2
LgoR
Bacteroides dorei DSM 17855 |
1
LgoR
Bacteroides eggerthii DSM 20697 |
1
LgoR
Bacteroides finegoldii DSM 17565 |
- | - |
2
LgoR
Bacteroides ovatus ATCC 8483 |
- | - |
3
LgoR
Bacteroides thetaiotaomicron VPI-5482 |
- |
2
LgoR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| ManR | - | - | - | - |
3
ManR
Bacteroides eggerthii DSM 20697 |
2
ManR
Bacteroides finegoldii DSM 17565 |
- | - |
3
ManR
Bacteroides ovatus ATCC 8483 |
- | - |
3
ManR
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| NanR | - |
2
NanR
Bacteroides cellulosilyticus DSM 14838 |
2
NanR
Bacteroides coprophilus DSM 18228 |
4
NanR
Bacteroides dorei DSM 17855 |
4
NanR
Bacteroides eggerthii DSM 20697 |
3
NanR
Bacteroides finegoldii DSM 17565 |
8
NanR
Bacteroides fragilis NCTC 9343 |
6
NanR
Bacteroides fragilis YCH46 |
3
NanR
Bacteroides ovatus ATCC 8483 |
7
NanR
Bacteroides plebeius DSM 17135 |
5
NanR
Bacteroides stercoris ATCC 43183 |
4
NanR
Bacteroides thetaiotaomicron VPI-5482 |
5
NanR
Bacteroides uniformis ATCC 8492 |
5
NanR
Bacteroides vulgatus ATCC 8482 |
- |
1
NanR
Parabacteroides distasonis ATCC 8503 |
1
NanR
Parabacteroides johnsonii DSM 18315 |
1
NanR
Parabacteroides merdae ATCC 43184 |
- | - | - | - |
| NrfR | - |
1
NrfR
Bacteroides cellulosilyticus DSM 14838 |
- | - | - | - |
1
NrfR
Bacteroides fragilis NCTC 9343 |
1
NrfR
Bacteroides fragilis YCH46 |
1
NrfR
Bacteroides ovatus ATCC 8483 |
1
NrfR
Bacteroides plebeius DSM 17135 |
- |
1
NrfR
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| PerR | - |
4
PerR
Bacteroides cellulosilyticus DSM 14838 |
6
PerR
Bacteroides coprophilus DSM 18228 |
7
PerR
Bacteroides dorei DSM 17855 |
4
PerR
Bacteroides eggerthii DSM 20697 |
1
PerR
Bacteroides finegoldii DSM 17565 |
3
PerR
Bacteroides fragilis NCTC 9343 |
3
PerR
Bacteroides fragilis YCH46 |
3
PerR
Bacteroides ovatus ATCC 8483 |
5
PerR
Bacteroides plebeius DSM 17135 |
4
PerR
Bacteroides stercoris ATCC 43183 |
3
PerR
Bacteroides thetaiotaomicron VPI-5482 |
4
PerR
Bacteroides uniformis ATCC 8492 |
7
PerR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| RhaR | - |
1
RhaR
Bacteroides cellulosilyticus DSM 14838 |
- |
1
RhaR
Bacteroides dorei DSM 17855 |
1
RhaR
Bacteroides eggerthii DSM 20697 |
- | - | - | - | - |
1
RhaR
Bacteroides stercoris ATCC 43183 |
1
RhaR
Bacteroides thetaiotaomicron VPI-5482 |
1
RhaR
Bacteroides uniformis ATCC 8492 |
1
RhaR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| SusR | - | - |
1
SusR
Bacteroides coprophilus DSM 18228 |
1
SusR
Bacteroides dorei DSM 17855 |
- | - | - | - |
2
SusR
Bacteroides ovatus ATCC 8483 |
2
SusR
Bacteroides plebeius DSM 17135 |
- |
1
SusR
Bacteroides thetaiotaomicron VPI-5482 |
- |
2
SusR
Bacteroides vulgatus ATCC 8482 |
- | - | - | - | - | - | - | - |
| SusR2 | - | - | - | - | - |
1
SusR2
Bacteroides finegoldii DSM 17565 |
- | - |
1
SusR2
Bacteroides ovatus ATCC 8483 |
- |
1
SusR2
Bacteroides stercoris ATCC 43183 |
1
SusR2
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| SusR3 | - | - | - | - | - |
1
SusR3
Bacteroides finegoldii DSM 17565 |
- | - |
1
SusR3
Bacteroides ovatus ATCC 8483 |
- | - |
1
SusR3
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| SusR4 | - | - | - | - | - | - | - | - |
1
SusR4
Bacteroides ovatus ATCC 8483 |
- | - |
1
SusR4
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| UxaR | - |
2
UxaR
Bacteroides cellulosilyticus DSM 14838 |
- | - |
2
UxaR
Bacteroides eggerthii DSM 20697 |
2
UxaR
Bacteroides finegoldii DSM 17565 |
- | - |
2
UxaR
Bacteroides ovatus ATCC 8483 |
- |
2
UxaR
Bacteroides stercoris ATCC 43183 |
2
UxaR
Bacteroides thetaiotaomicron VPI-5482 |
2
UxaR
Bacteroides uniformis ATCC 8492 |
- | - | - | - | - | - | - | - | - |
| UxuR | - | - | - | - | - | - | - | - |
1
UxuR
Bacteroides ovatus ATCC 8483 |
1
UxuR
Bacteroides plebeius DSM 17135 |
- |
1
UxuR
Bacteroides thetaiotaomicron VPI-5482 |
- | - | - | - | - | - | - | - | - | - |
| XylR | - |
1
XylR
Bacteroides cellulosilyticus DSM 14838 |
- |
2
XylR
Bacteroides dorei DSM 17855 |
1
XylR
Bacteroides eggerthii DSM 20697 |
2
XylR
Bacteroides finegoldii DSM 17565 |
1
XylR
Bacteroides fragilis NCTC 9343 |
1
XylR
Bacteroides fragilis YCH46 |
2
XylR
Bacteroides ovatus ATCC 8483 |
1
XylR
Bacteroides plebeius DSM 17135 |
1
XylR
Bacteroides stercoris ATCC 43183 |
2
XylR
Bacteroides thetaiotaomicron VPI-5482 |
1
XylR
Bacteroides uniformis ATCC 8492 |
3
XylR
Bacteroides vulgatus ATCC 8482 |
- | - |
1
XylR
Parabacteroides johnsonii DSM 18315 |
- | - | - | - | - |
| Zur | - |
3
Zur
Bacteroides cellulosilyticus DSM 14838 |
1
Zur
Bacteroides coprophilus DSM 18228 |
3
Zur
Bacteroides dorei DSM 17855 |
2
Zur
Bacteroides eggerthii DSM 20697 |
2
Zur
Bacteroides finegoldii DSM 17565 |
1
Zur
Bacteroides fragilis NCTC 9343 |
1
Zur
Bacteroides fragilis YCH46 |
3
Zur
Bacteroides ovatus ATCC 8483 |
1
Zur
Bacteroides plebeius DSM 17135 |
1
Zur
Bacteroides stercoris ATCC 43183 |
3
Zur
Bacteroides thetaiotaomicron VPI-5482 |
1
Zur
Bacteroides uniformis ATCC 8492 |
3
Zur
Bacteroides vulgatus ATCC 8482 |
- |
2
Zur
Parabacteroides distasonis ATCC 8503 |
1
Zur
Parabacteroides johnsonii DSM 18315 |
1
Zur
Parabacteroides merdae ATCC 43184 |
- | - | - | - |
| 5 | Orthologous regulator is detected and five members of regulon are predicted in a target genome |
| - | Orthologous regulator is detected in a target genome but no potential members of regulon where identified |
| 3 | Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome. |
| 3 | Neither orthologous regulator no potential members of regulon were found in a target genome |