Draft regulons reconstructed by automated conservative propagation


Template (reference) regulons			Propagated regulons
Regulog collection	Genomes	TF regulons		Taxonomic group	Genomes	TF regulons
Bacteroidaceae	11	223	➠	Bacteroidaceae	22	254

Studied genomes and reconstructed regulon statistics
	Genomes	Regulons	Sites
*	Bacteroides cellulosilyticus DSM 14838	18	51
*	Bacteroides coprophilus DSM 18228	9	19
*	Bacteroides dorei DSM 17855	19	59
*	Bacteroides eggerthii DSM 20697	16	57
	Bacteroides finegoldii DSM 17565	19	51
*	Bacteroides fragilis NCTC 9343	13	56
	Bacteroides fragilis YCH46	12	54
*	Bacteroides ovatus ATCC 8483	27	67
*	Bacteroides plebeius DSM 17135	20	50
*	Bacteroides stercoris ATCC 43183	13	39
*	Bacteroides thetaiotaomicron VPI-5482	34	99
*	Bacteroides uniformis ATCC 8492	15	50
*	Bacteroides vulgatus ATCC 8482	19	69
	Parabacteroides distasonis ATCC 8503	4	10
	Parabacteroides johnsonii DSM 18315	8	12
	Parabacteroides merdae ATCC 43184	5	10
	Prevotella copri DSM 18205	2	3
	Prevotella ruminicola 23	1	1

*	- reference regulons from this genome have been used as a template for the conservative propagation

Genomic distribution of propagated regulons

Reference regulog
AraR	-	2 AraR Bacteroides cellulosilyticus DSM 14838	-	1 AraR Bacteroides dorei DSM 17855	1 AraR Bacteroides eggerthii DSM 20697	-	-	-	2 AraR Bacteroides ovatus ATCC 8483	2 AraR Bacteroides plebeius DSM 17135	-	2 AraR Bacteroides thetaiotaomicron VPI-5482	2 AraR Bacteroides uniformis ATCC 8492	1 AraR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
ArgR	-	-	1 ArgR Bacteroides coprophilus DSM 18228	1 ArgR Bacteroides dorei DSM 17855	1 ArgR Bacteroides eggerthii DSM 20697	-	1 ArgR Bacteroides fragilis NCTC 9343	1 ArgR Bacteroides fragilis YCH46	1 ArgR Bacteroides ovatus ATCC 8483	1 ArgR Bacteroides plebeius DSM 17135	1 ArgR Bacteroides stercoris ATCC 43183	1 ArgR Bacteroides thetaiotaomicron VPI-5482	1 ArgR Bacteroides uniformis ATCC 8492	1 ArgR Bacteroides vulgatus ATCC 8482	-	-	1 ArgR Parabacteroides johnsonii DSM 18315	1 ArgR Parabacteroides merdae ATCC 43184	-	-	-	1 ArgR Prevotella ruminicola 23
Crp	-	10 Crp Bacteroides cellulosilyticus DSM 14838	2 Crp Bacteroides coprophilus DSM 18228	9 Crp Bacteroides dorei DSM 17855	9 Crp Bacteroides eggerthii DSM 20697	9 Crp Bacteroides finegoldii DSM 17565	10 Crp Bacteroides fragilis NCTC 9343	10 Crp Bacteroides fragilis YCH46	5 Crp Bacteroides ovatus ATCC 8483	3 Crp Bacteroides plebeius DSM 17135	9 Crp Bacteroides stercoris ATCC 43183	12 Crp Bacteroides thetaiotaomicron VPI-5482	10 Crp Bacteroides uniformis ATCC 8492	11 Crp Bacteroides vulgatus ATCC 8482	-	3 Crp Parabacteroides distasonis ATCC 8503	3 Crp Parabacteroides johnsonii DSM 18315	4 Crp Parabacteroides merdae ATCC 43184	-	-	1 Crp Prevotella copri DSM 18205	-
FucR	-	1 FucR Bacteroides cellulosilyticus DSM 14838	-	1 FucR Bacteroides dorei DSM 17855	-	1 FucR Bacteroides finegoldii DSM 17565	2 FucR Bacteroides fragilis NCTC 9343	2 FucR Bacteroides fragilis YCH46	1 FucR Bacteroides ovatus ATCC 8483	1 FucR Bacteroides plebeius DSM 17135	-	1 FucR Bacteroides thetaiotaomicron VPI-5482	-	1 FucR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
Fur	-	-	1 Fur Bacteroides coprophilus DSM 18228	1 Fur Bacteroides dorei DSM 17855	1 Fur Bacteroides eggerthii DSM 20697	1 Fur Bacteroides finegoldii DSM 17565	1 Fur Bacteroides fragilis NCTC 9343	1 Fur Bacteroides fragilis YCH46	-	1 Fur Bacteroides plebeius DSM 17135	-	1 Fur Bacteroides thetaiotaomicron VPI-5482	1 Fur Bacteroides uniformis ATCC 8492	1 Fur Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
HTCS_Aga-1	-	-	-	-	-	-	-	-	-	-	-	3 HTCS_Aga-1 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Ara-1	-	1 HTCS_Ara-1 Bacteroides cellulosilyticus DSM 14838	-	2 HTCS_Ara-1 Bacteroides dorei DSM 17855	2 HTCS_Ara-1 Bacteroides eggerthii DSM 20697	-	-	-	-	2 HTCS_Ara-1 Bacteroides plebeius DSM 17135	-	2 HTCS_Ara-1 Bacteroides thetaiotaomicron VPI-5482	-	2 HTCS_Ara-1 Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	1 HTCS_Ara-1 Prevotella copri DSM 18205	-
HTCS_Ara-2	-	1 HTCS_Ara-2 Bacteroides cellulosilyticus DSM 14838	-	1 HTCS_Ara-2 Bacteroides dorei DSM 17855	-	2 HTCS_Ara-2 Bacteroides finegoldii DSM 17565	-	-	1 HTCS_Ara-2 Bacteroides ovatus ATCC 8483	2 HTCS_Ara-2 Bacteroides plebeius DSM 17135	-	3 HTCS_Ara-2 Bacteroides thetaiotaomicron VPI-5482	-	1 HTCS_Ara-2 Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
HTCS_Fru	-	-	1 HTCS_Fru Bacteroides coprophilus DSM 18228	1 HTCS_Fru Bacteroides dorei DSM 17855	-	2 HTCS_Fru Bacteroides finegoldii DSM 17565	2 HTCS_Fru Bacteroides fragilis NCTC 9343	1 HTCS_Fru Bacteroides fragilis YCH46	3 HTCS_Fru Bacteroides ovatus ATCC 8483	2 HTCS_Fru Bacteroides plebeius DSM 17135	-	4 HTCS_Fru Bacteroides thetaiotaomicron VPI-5482	2 HTCS_Fru Bacteroides uniformis ATCC 8492	2 HTCS_Fru Bacteroides vulgatus ATCC 8482	-	-	1 HTCS_Fru Parabacteroides johnsonii DSM 18315	-	-	-	-	-
HTCS_Hep	-	-	-	-	-	1 HTCS_Hep Bacteroides finegoldii DSM 17565	-	-	3 HTCS_Hep Bacteroides ovatus ATCC 8483	-	1 HTCS_Hep Bacteroides stercoris ATCC 43183	3 HTCS_Hep Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Hya	-	2 HTCS_Hya Bacteroides cellulosilyticus DSM 14838	-	-	2 HTCS_Hya Bacteroides eggerthii DSM 20697	2 HTCS_Hya Bacteroides finegoldii DSM 17565	-	-	2 HTCS_Hya Bacteroides ovatus ATCC 8483	1 HTCS_Hya Bacteroides plebeius DSM 17135	3 HTCS_Hya Bacteroides stercoris ATCC 43183	2 HTCS_Hya Bacteroides thetaiotaomicron VPI-5482	1 HTCS_Hya Bacteroides uniformis ATCC 8492	-	-	-	-	-	-	-	-	-
HTCS_Man-1	-	-	-	-	-	-	-	-	1 HTCS_Man-1 Bacteroides ovatus ATCC 8483	-	-	1 HTCS_Man-1 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Man-2	-	-	-	-	-	-	-	-	-	-	-	1 HTCS_Man-2 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Man-3	-	1 HTCS_Man-3 Bacteroides cellulosilyticus DSM 14838	-	-	-	-	1 HTCS_Man-3 Bacteroides fragilis NCTC 9343	-	-	-	-	4 HTCS_Man-3 Bacteroides thetaiotaomicron VPI-5482	1 HTCS_Man-3 Bacteroides uniformis ATCC 8492	-	-	-	-	-	-	-	-	-
HTCS_Ogl-1	-	-	-	-	-	-	-	-	-	-	-	1 HTCS_Ogl-1 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Ogl-2	-	-	-	-	-	-	-	-	-	-	-	1 HTCS_Ogl-2 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
HTCS_Pga	-	-	-	-	-	1 HTCS_Pga Bacteroides finegoldii DSM 17565	-	-	1 HTCS_Pga Bacteroides ovatus ATCC 8483	-	-	-	-	-	-	-	-	-	-	-	-	-
HTCS_Rgu-1	-	3 HTCS_Rgu-1 Bacteroides cellulosilyticus DSM 14838	-	4 HTCS_Rgu-1 Bacteroides dorei DSM 17855	3 HTCS_Rgu-1 Bacteroides eggerthii DSM 20697	3 HTCS_Rgu-1 Bacteroides finegoldii DSM 17565	-	-	2 HTCS_Rgu-1 Bacteroides ovatus ATCC 8483	2 HTCS_Rgu-1 Bacteroides plebeius DSM 17135	1 HTCS_Rgu-1 Bacteroides stercoris ATCC 43183	5 HTCS_Rgu-1 Bacteroides thetaiotaomicron VPI-5482	-	4 HTCS_Rgu-1 Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
HTCS_Rgu-2	-	-	-	7 HTCS_Rgu-2 Bacteroides dorei DSM 17855	-	-	-	-	6 HTCS_Rgu-2 Bacteroides ovatus ATCC 8483	4 HTCS_Rgu-2 Bacteroides plebeius DSM 17135	-	7 HTCS_Rgu-2 Bacteroides thetaiotaomicron VPI-5482	-	8 HTCS_Rgu-2 Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
HcpR	-	2 HcpR Bacteroides cellulosilyticus DSM 14838	3 HcpR Bacteroides coprophilus DSM 18228	2 HcpR Bacteroides dorei DSM 17855	-	-	2 HcpR Bacteroides fragilis NCTC 9343	2 HcpR Bacteroides fragilis YCH46	1 HcpR Bacteroides ovatus ATCC 8483	3 HcpR Bacteroides plebeius DSM 17135	-	1 HcpR Bacteroides thetaiotaomicron VPI-5482	2 HcpR Bacteroides uniformis ATCC 8492	2 HcpR Bacteroides vulgatus ATCC 8482	-	1 HcpR Parabacteroides distasonis ATCC 8503	2 HcpR Parabacteroides johnsonii DSM 18315	-	-	-	-	-
KdgR	-	2 KdgR Bacteroides cellulosilyticus DSM 14838	-	3 KdgR Bacteroides dorei DSM 17855	2 KdgR Bacteroides eggerthii DSM 20697	4 KdgR Bacteroides finegoldii DSM 17565	4 KdgR Bacteroides fragilis NCTC 9343	4 KdgR Bacteroides fragilis YCH46	2 KdgR Bacteroides ovatus ATCC 8483	1 KdgR Bacteroides plebeius DSM 17135	1 KdgR Bacteroides stercoris ATCC 43183	4 KdgR Bacteroides thetaiotaomicron VPI-5482	3 KdgR Bacteroides uniformis ATCC 8492	4 KdgR Bacteroides vulgatus ATCC 8482	-	-	1 KdgR Parabacteroides johnsonii DSM 18315	1 KdgR Parabacteroides merdae ATCC 43184	-	-	-	-
LgoR	-	3 LgoR Bacteroides cellulosilyticus DSM 14838	-	2 LgoR Bacteroides dorei DSM 17855	1 LgoR Bacteroides eggerthii DSM 20697	1 LgoR Bacteroides finegoldii DSM 17565	-	-	2 LgoR Bacteroides ovatus ATCC 8483	-	-	3 LgoR Bacteroides thetaiotaomicron VPI-5482	-	2 LgoR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
ManR	-	-	-	-	3 ManR Bacteroides eggerthii DSM 20697	2 ManR Bacteroides finegoldii DSM 17565	-	-	3 ManR Bacteroides ovatus ATCC 8483	-	-	3 ManR Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
NanR	-	2 NanR Bacteroides cellulosilyticus DSM 14838	2 NanR Bacteroides coprophilus DSM 18228	4 NanR Bacteroides dorei DSM 17855	4 NanR Bacteroides eggerthii DSM 20697	3 NanR Bacteroides finegoldii DSM 17565	8 NanR Bacteroides fragilis NCTC 9343	6 NanR Bacteroides fragilis YCH46	3 NanR Bacteroides ovatus ATCC 8483	7 NanR Bacteroides plebeius DSM 17135	5 NanR Bacteroides stercoris ATCC 43183	4 NanR Bacteroides thetaiotaomicron VPI-5482	5 NanR Bacteroides uniformis ATCC 8492	5 NanR Bacteroides vulgatus ATCC 8482	-	1 NanR Parabacteroides distasonis ATCC 8503	1 NanR Parabacteroides johnsonii DSM 18315	1 NanR Parabacteroides merdae ATCC 43184	-	-	-	-
NrfR	-	1 NrfR Bacteroides cellulosilyticus DSM 14838	-	-	-	-	1 NrfR Bacteroides fragilis NCTC 9343	1 NrfR Bacteroides fragilis YCH46	1 NrfR Bacteroides ovatus ATCC 8483	1 NrfR Bacteroides plebeius DSM 17135	-	1 NrfR Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
PerR	-	4 PerR Bacteroides cellulosilyticus DSM 14838	6 PerR Bacteroides coprophilus DSM 18228	7 PerR Bacteroides dorei DSM 17855	4 PerR Bacteroides eggerthii DSM 20697	1 PerR Bacteroides finegoldii DSM 17565	3 PerR Bacteroides fragilis NCTC 9343	3 PerR Bacteroides fragilis YCH46	3 PerR Bacteroides ovatus ATCC 8483	5 PerR Bacteroides plebeius DSM 17135	4 PerR Bacteroides stercoris ATCC 43183	3 PerR Bacteroides thetaiotaomicron VPI-5482	4 PerR Bacteroides uniformis ATCC 8492	7 PerR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
RhaR	-	1 RhaR Bacteroides cellulosilyticus DSM 14838	-	1 RhaR Bacteroides dorei DSM 17855	1 RhaR Bacteroides eggerthii DSM 20697	-	-	-	-	-	1 RhaR Bacteroides stercoris ATCC 43183	1 RhaR Bacteroides thetaiotaomicron VPI-5482	1 RhaR Bacteroides uniformis ATCC 8492	1 RhaR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
SusR	-	-	1 SusR Bacteroides coprophilus DSM 18228	1 SusR Bacteroides dorei DSM 17855	-	-	-	-	2 SusR Bacteroides ovatus ATCC 8483	2 SusR Bacteroides plebeius DSM 17135	-	1 SusR Bacteroides thetaiotaomicron VPI-5482	-	2 SusR Bacteroides vulgatus ATCC 8482	-	-	-	-	-	-	-	-
SusR2	-	-	-	-	-	1 SusR2 Bacteroides finegoldii DSM 17565	-	-	1 SusR2 Bacteroides ovatus ATCC 8483	-	1 SusR2 Bacteroides stercoris ATCC 43183	1 SusR2 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
SusR3	-	-	-	-	-	1 SusR3 Bacteroides finegoldii DSM 17565	-	-	1 SusR3 Bacteroides ovatus ATCC 8483	-	-	1 SusR3 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
SusR4	-	-	-	-	-	-	-	-	1 SusR4 Bacteroides ovatus ATCC 8483	-	-	1 SusR4 Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
UxaR	-	2 UxaR Bacteroides cellulosilyticus DSM 14838	-	-	2 UxaR Bacteroides eggerthii DSM 20697	2 UxaR Bacteroides finegoldii DSM 17565	-	-	2 UxaR Bacteroides ovatus ATCC 8483	-	2 UxaR Bacteroides stercoris ATCC 43183	2 UxaR Bacteroides thetaiotaomicron VPI-5482	2 UxaR Bacteroides uniformis ATCC 8492	-	-	-	-	-	-	-	-	-
UxuR	-	-	-	-	-	-	-	-	1 UxuR Bacteroides ovatus ATCC 8483	1 UxuR Bacteroides plebeius DSM 17135	-	1 UxuR Bacteroides thetaiotaomicron VPI-5482	-	-	-	-	-	-	-	-	-	-
XylR	-	1 XylR Bacteroides cellulosilyticus DSM 14838	-	2 XylR Bacteroides dorei DSM 17855	1 XylR Bacteroides eggerthii DSM 20697	2 XylR Bacteroides finegoldii DSM 17565	1 XylR Bacteroides fragilis NCTC 9343	1 XylR Bacteroides fragilis YCH46	2 XylR Bacteroides ovatus ATCC 8483	1 XylR Bacteroides plebeius DSM 17135	1 XylR Bacteroides stercoris ATCC 43183	2 XylR Bacteroides thetaiotaomicron VPI-5482	1 XylR Bacteroides uniformis ATCC 8492	3 XylR Bacteroides vulgatus ATCC 8482	-	-	1 XylR Parabacteroides johnsonii DSM 18315	-	-	-	-	-
Zur	-	3 Zur Bacteroides cellulosilyticus DSM 14838	1 Zur Bacteroides coprophilus DSM 18228	3 Zur Bacteroides dorei DSM 17855	2 Zur Bacteroides eggerthii DSM 20697	2 Zur Bacteroides finegoldii DSM 17565	1 Zur Bacteroides fragilis NCTC 9343	1 Zur Bacteroides fragilis YCH46	3 Zur Bacteroides ovatus ATCC 8483	1 Zur Bacteroides plebeius DSM 17135	1 Zur Bacteroides stercoris ATCC 43183	3 Zur Bacteroides thetaiotaomicron VPI-5482	1 Zur Bacteroides uniformis ATCC 8492	3 Zur Bacteroides vulgatus ATCC 8482	-	2 Zur Parabacteroides distasonis ATCC 8503	1 Zur Parabacteroides johnsonii DSM 18315	1 Zur Parabacteroides merdae ATCC 43184	-	-	-	-

-- Legend --

5	Orthologous regulator is detected and five members of regulon are predicted in a target genome
-	Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3	Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3	Neither orthologous regulator no potential members of regulon were found in a target genome

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Draft regulons reconstructed by automated conservative propagation

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --