Regulog KdgR - Bacteroidaceae

Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - LacI
- By effector - 2-keto-3-deoxygluconate
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
Genome | Genes | Operons |
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Bacteroides cellulosilyticus DSM 14838 | 5 | 3 |
Bacteroides coprophilus DSM 18228 | ||
Bacteroides dorei DSM 17855 | 7 | 3 |
Bacteroides eggerthii DSM 20697 | 11 | 4 |
Bacteroides fragilis NCTC 9343 | 7 | 4 |
Bacteroides ovatus ATCC 8483 | 10 | 4 |
Bacteroides plebeius DSM 17135 | 7 | 3 |
Bacteroides stercoris ATCC 43183 | 10 | 4 |
Bacteroides thetaiotaomicron VPI-5482 | 10 | 4 |
Bacteroides uniformis ATCC 8492 | 10 | 4 |
Bacteroides vulgatus ATCC 8482 | 11 | 4 |
Genes | Function | |||||||||||
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CRON 1. | ||||||||||||
sgcC |
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Gene: BACCOPRO_03343: putative phosphotransferase enzyme II, C component |
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Bacteroides dorei DSM 17855 Site: position = -25 score = 4.52247 sequence = TTCGTGTGCGAAAACGGT Site: position = -3 score = 4.49716 sequence = TTTGTGCACGATAACGAT Gene: BACDOR_03279: putative phosphotransferase enzyme II, C component |
*
Bacteroides eggerthii DSM 20697 Site: position = -182 score = 4.93465 sequence = TTCGTGTACGAAAACGAA Site: position = -160 score = 4.13385 sequence = TTTGTGCACGATAACGAC Gene: BACEGG_00862: putative phosphotransferase enzyme II, C component |
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Bacteroides ovatus ATCC 8483 Site: position = -193 score = 4.48268 sequence = TTCGTGCACGGAAACGAC Site: position = -171 score = 4.31263 sequence = TTTGTGCACGCAAACGTC Gene: BACOVA_04898: putative phosphotransferase enzyme II, C component |
*
Bacteroides plebeius DSM 17135 Site: position = -154 score = 4.56726 sequence = TCCGTGTGCGTAAACGAA Gene: BACPLE_00506: putative phosphotransferase enzyme II, C component |
*
Bacteroides stercoris ATCC 43183 Site: position = -182 score = 4.93465 sequence = TTCGTGTACGAAAACGAA Site: position = -160 score = 4.13385 sequence = TTTGTGCACGATAACGAC Gene: BACSTE_03306: putative phosphotransferase enzyme II, C component |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -194 score = 4.48268 sequence = TTCGTGCACGGAAACGAC Site: position = -172 score = 4.22638 sequence = TTTGTGCACGTAAACGTC Gene: BT4107: putative phosphotransferase enzyme II, C component |
*
Bacteroides uniformis ATCC 8492 Site: position = -183 score = 4.56154 sequence = TTCGTGTACGAAAACGAG Site: position = -161 score = 4.13385 sequence = TTTGTGCACGATAACGAC Gene: BACUNI_03601: putative phosphotransferase enzyme II, C component |
*
Bacteroides vulgatus ATCC 8482 Site: position = -181 score = 4.52247 sequence = TTCGTGTGCGAAAACGGT Site: position = -159 score = 4.49716 sequence = TTTGTGCACGATAACGAT Gene: BVU_1796: putative phosphotransferase enzyme II, C component |
putative phosphotransferase enzyme II, C component |
kduI2 |
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Gene: BACCOPRO_03342: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BACDOR_03280: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BACEGG_00861: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Gene: BACOVA_04897: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BACPLE_00505: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BACSTE_03307: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BT4106: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BACUNI_03602: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BVU_1795: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
hexT |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -170 score = 4.59726 sequence = TTCGTGTGCGAGAACGAG Site: position = -154 score = 4.68141 sequence = AGTGTTTTCGTGCACGAT Gene: BACCELL_03118: Hexuronate transporter |
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Gene: BACDOR_03281: Hexuronate transporter |
Gene: BACEGG_00860: Hexuronate transporter |
*
Bacteroides fragilis NCTC 9343 Site: position = -198 score = 4.50879 sequence = GTCGTGTGCGAAAACGAT Site: position = -176 score = 4.5773 sequence = ATTGTGTTCGATAACGAA Gene: BF0809: Hexuronate transporter |
Gene: BACOVA_04896: Hexuronate transporter |
Gene: BACPLE_00504: Hexuronate transporter |
Gene: BACSTE_03308: Hexuronate transporter |
Gene: BT4105: Hexuronate transporter |
Gene: BACUNI_03603: Hexuronate transporter |
Gene: BVU_1794: Hexuronate transporter |
Hexuronate transporter |
CRON 2. | ||||||||||||
kduI1 |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -64 score = 4.83063 sequence = ATCGTGTACGTAAACGAA Gene: BACCELL_02166: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Gene: BACDOR_01921: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacteroides eggerthii DSM 20697 Site: position = -64 score = 4.39292 sequence = ATCGTGTACGTAAACGAC Gene: BACEGG_03270: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacteroides fragilis NCTC 9343 Site: position = -61 score = 4.12955 sequence = GTCGTGTGCGTAAACGGA Gene: BF0082: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacteroides ovatus ATCC 8483 Site: position = -66 score = 4.83063 sequence = ATCGTGTACGTAAACGAA Gene: BACOVA_00140: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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*
Bacteroides stercoris ATCC 43183 Site: position = -65 score = 4.39292 sequence = ATCGTGTACGTAAACGAC Gene: BACSTE_02324: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -66 score = 4.75623 sequence = ATCGTGTACGTAAACGAT Gene: BT3231: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacteroides uniformis ATCC 8492 Site: position = -64 score = 4.84248 sequence = ATCGTGTACGCAAACGAT Gene: BACUNI_04204: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BVU_1107: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
kduD |
Gene: BACCELL_02167: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACCOPRO_03345: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACDOR_01920: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACEGG_03269: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BF0083: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACOVA_00141: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACPLE_00572: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACSTE_02323: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BT3232: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BACUNI_04203: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BVU_1106: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
BT3233 |
Gene: BACCELL_02168: putative secreted glycosyl hydrolase |
Gene: BACCOPRO_03344: putative secreted glycosyl hydrolase |
Gene: BACDOR_01919: putative secreted glycosyl hydrolase |
Gene: BACEGG_03268: putative secreted glycosyl hydrolase |
Gene: BF0084: putative secreted glycosyl hydrolase |
Gene: BACOVA_00143: putative secreted glycosyl hydrolase |
Gene: BACPLE_00573: putative secreted glycosyl hydrolase |
Gene: BACSTE_02322: putative secreted glycosyl hydrolase |
Gene: BT3233: putative secreted glycosyl hydrolase |
Gene: BACUNI_04201: putative secreted glycosyl hydrolase |
Gene: BVU_1105: putative secreted glycosyl hydrolase |
putative secreted glycosyl hydrolase |
CRON 3. | ||||||||||||
kdgK |
2
Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04097: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Gene: BACCELL_04096: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: BACCOPRO_03341: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides dorei DSM 17855 Site: position = -228 score = 5.54772 sequence = ATTGTGCTCGTACACACT Site: position = -145 score = 5.38304 sequence = TTTGTGCACGCACACGGA Gene: BACDOR_02921: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides eggerthii DSM 20697 Site: position = -227 score = 5.96017 sequence = TTTGTGTTCGTACACAAT Site: position = -145 score = 5.87296 sequence = TTTGTGCCCGCACACGAA Gene: BACEGG_01788: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides fragilis NCTC 9343 Site: position = -228 score = 5.72429 sequence = TTTGTGCCCGGACACACT Site: position = -146 score = 5.49946 sequence = TTTGTGTCCGCACACGGA Gene: BF2719: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides ovatus ATCC 8483 Site: position = -228 score = 5.99589 sequence = TTTGTGCTCGCACACAAT Site: position = -146 score = 5.87296 sequence = TTTGTGCCCGCACACGAA Gene: BACOVA_03830: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides plebeius DSM 17135 Site: position = -112 score = 6.09122 sequence = TTTGTGTGCGTACACAAA Gene: BACPLE_00831: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides stercoris ATCC 43183 Site: position = -228 score = 5.89538 sequence = TTTGTGCCCGTGCACAAT Site: position = -146 score = 5.87296 sequence = TTTGTGCCCGCACACGAA Gene: BACSTE_00505: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -228 score = 5.57186 sequence = TATGTGCTCGCACACAAT Site: position = -146 score = 5.87296 sequence = TTTGTGCCCGCACACGAA Gene: BT0488: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides uniformis ATCC 8492 Site: position = -231 score = 5.62279 sequence = CTTGTGCTCGCACACAAT Site: position = -149 score = 5.7867 sequence = TTTGTGCCCGTACACGAA Gene: BACUNI_01828: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -228 score = 5.49719 sequence = ATTGTGCTCGTGCACACT Site: position = -145 score = 5.38304 sequence = TTTGTGCACGCACACGGA Gene: BVU_3055: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
BACCELL_04095 |
Gene: BACCELL_04095: hypothetical protein |
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Gene: BACEGG_01789: hypothetical protein |
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Gene: BACUNI_01829: hypothetical protein |
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hypothetical protein |
kdgA |
Gene: BACCELL_04094: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACCOPRO_03340: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACDOR_02920: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACEGG_01790: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BF2718: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACOVA_03829: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACPLE_00830: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACSTE_00504: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BT0489: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BACUNI_01830: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BVU_3056: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
CRON 4. | ||||||||||||
susC_Kdg |
Gene: BACCELL_03177: TonB-dependent outer membrane transporter of pectin oligosaccharides |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -181 score = 5.43357 sequence = TTTGTGTGCGTACACGGA Gene: BVU_1120: TonB-dependent outer membrane transporter of pectin oligosaccharides |
TonB-dependent outer membrane transporter of pectin oligosaccharides |
susD_Kdg |
Gene: BACCELL_03178: Outer membrane polysaccharide binding protein for pectin oligosaccharides |
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Gene: BVU_1119: Outer membrane polysaccharide binding protein for pectin oligosaccharides |
Outer membrane polysaccharide binding protein for pectin oligosaccharides |
BVU_1118 |
Gene: BACCELL_03179: hypothetical secreted protein |
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Gene: BVU_1118: hypothetical secreted protein |
hypothetical secreted protein |
PF09492 |
Gene: BACCELL_03653: Pectate lyase, secreted |
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Gene: BVU_1116: Pectate lyase, secreted |
Pectate lyase, secreted |
CRON 5. | ||||||||||||
kdgR |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -154 score = 5.64499 sequence = ATTGTGTGCGGACACAAC Gene: BACCELL_04099: Predicted transcriptional regulator for altronate catabolism, LacI family |
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*
Bacteroides dorei DSM 17855 Site: position = -115 score = 5.38304 sequence = TCCGTGTGCGTGCACAAA Site: position = -32 score = 5.54772 sequence = AGTGTGTACGAGCACAAT Gene: BACDOR_02922: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides eggerthii DSM 20697 Site: position = 39 score = 5.87296 sequence = TTCGTGTGCGGGCACAAA Site: position = 121 score = 5.96017 sequence = ATTGTGTACGAACACAAA Gene: BACEGG_01787: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides fragilis NCTC 9343 Site: position = -125 score = 5.49946 sequence = TCCGTGTGCGGACACAAA Site: position = -43 score = 5.72429 sequence = AGTGTGTCCGGGCACAAA Gene: BF2720: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides ovatus ATCC 8483 Site: position = -125 score = 5.87296 sequence = TTCGTGTGCGGGCACAAA Site: position = -43 score = 5.99589 sequence = ATTGTGTGCGAGCACAAA Gene: BACOVA_03831: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides plebeius DSM 17135 Site: position = -123 score = 6.09122 sequence = TTTGTGTACGCACACAAA Gene: BACPLE_00833: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides stercoris ATCC 43183 Site: position = 39 score = 5.87296 sequence = TTCGTGTGCGGGCACAAA Site: position = 121 score = 5.89538 sequence = ATTGTGCACGGGCACAAA Gene: BACSTE_00506: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -124 score = 5.87296 sequence = TTCGTGTGCGGGCACAAA Site: position = -42 score = 5.57186 sequence = ATTGTGTGCGAGCACATA Gene: BT0487: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides uniformis ATCC 8492 Site: position = -210 score = 5.7867 sequence = TTCGTGTACGGGCACAAA Site: position = -128 score = 5.62279 sequence = ATTGTGTGCGAGCACAAG Gene: BACUNI_01826: Predicted transcriptional regulator for altronate catabolism, LacI family |
*
Bacteroides vulgatus ATCC 8482 Site: position = -116 score = 5.38304 sequence = TCCGTGTGCGTGCACAAA Site: position = -33 score = 5.49719 sequence = AGTGTGCACGAGCACAAT Gene: BVU_3054: Predicted transcriptional regulator for altronate catabolism, LacI family |
Predicted transcriptional regulator for altronate catabolism, LacI family |
uxaA |
Gene: BACCELL_04100: Altronate hydrolase (EC 4.2.1.7) |
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Gene: BACDOR_02923: Altronate hydrolase (EC 4.2.1.7) |
Gene: BACEGG_01786: Altronate hydrolase (EC 4.2.1.7) |
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Gene: BACOVA_03832: Altronate hydrolase (EC 4.2.1.7) |
2
Bacteroides plebeius DSM 17135 Gene: BACPLE_00834: Altronate hydrolase (EC 4.2.1.7) Gene: BACPLE_03447: Altronate hydrolase (EC 4.2.1.7) |
Gene: BACSTE_00507: Altronate hydrolase (EC 4.2.1.7) |
Gene: BT0486: Altronate hydrolase (EC 4.2.1.7) |
Gene: BACUNI_01825: Altronate hydrolase (EC 4.2.1.7) |
Gene: BVU_3053: Altronate hydrolase (EC 4.2.1.7) |
Altronate hydrolase (EC 4.2.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |