Regulog HTCS_Ara-2 - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	activator (repressor)
Biological process:	Arabinan utilization
Effector:	Pectic galactan
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - [Other]
By effector - Pectic galactan
By pathway - Arabinan utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	6	1
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855	5	1
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	5	3
Bacteroides plebeius DSM 17135	6	2
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482	6	3
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
BVU_0840	* Bacteroides cellulosilyticus DSM 14838 Site: position = -132 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BACCELL_01905: Conserved hypothetical protein, presumably involved in arabinogalactan utilization	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -133 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BACDOR_04891: Conserved hypothetical protein, presumably involved in arabinogalactan utilization	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	* Bacteroides plebeius DSM 17135 Site: position = -107 score = 9.11537 sequence = TGAATGATTT-(12)-TGCATGATGT Gene: BACPLE_00181: Conserved hypothetical protein, presumably involved in arabinogalactan utilization	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03754: Conserved hypothetical protein, presumably involved in arabinogalactan utilization	* Bacteroides vulgatus ATCC 8482 Site: position = -133 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BVU_0840: Conserved hypothetical protein, presumably involved in arabinogalactan utilization	Conserved hypothetical protein, presumably involved in arabinogalactan utilization
susC_Ara-6	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01906: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04892: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_00180: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03753: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides vulgatus ATCC 8482 Gene: BVU_0841: TonB-dependent outer membrane transporter of arabinan oligosaccharides	TonB-dependent outer membrane transporter of arabinan oligosaccharides
susC_Ara-6	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01907: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04893: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_00179: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03752: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides vulgatus ATCC 8482 Gene: BVU_0842: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BVU_0843	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01908: Predicted endo-beta-1,6-galactanase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04894: Predicted endo-beta-1,6-galactanase	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_00178: Predicted endo-beta-1,6-galactanase	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03751: Predicted endo-beta-1,6-galactanase	Bacteroides vulgatus ATCC 8482 Gene: BVU_0843: Predicted endo-beta-1,6-galactanase	Predicted endo-beta-1,6-galactanase
bgaL	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01909: Beta-galactosidase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_00177: Beta-galactosidase	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03750: Beta-galactosidase	Bacteroides vulgatus ATCC 8482	Beta-galactosidase
abnX	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01910: Putabtive arabinosidase, GH30 family	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04895: Putabtive arabinosidase, GH30 family	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -50 score = 7.97598 sequence = TGTATGTTTT-(11)-TGTGTGATTT Gene: BACOVA_02661: Putabtive arabinosidase, GH30 family	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -105 score = 7.95405 sequence = TGCAAGATTT-(11)-TGGTCGTTTT Gene: BT3043: Putabtive arabinosidase, GH30 family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0844: Putabtive arabinosidase, GH30 family	Putabtive arabinosidase, GH30 family

CRON 2.
susC_Ara-5	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -113 score = 9.73876 sequence = TGCATGATTT-(12)-TGCATGATTT Gene: BACOVA_02665: TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein
susD_Ara-5	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02664: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BACOVA_02663	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02663: Hypothetical protein, presumably involved in arabinan utilization	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Hypothetical protein, presumably involved in arabinan utilization

CRON 3.
sbp_Ara-4	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01899: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -262 score = 8.98743 sequence = TGAATGATTC-(11)-TGAATGATTT Gene: BT3047: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding
susC_Ara-4	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01900: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3046: TonB-dependent outer membrane transporter of arabinan oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of arabinan oligosaccharides
susD_Ara-4	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01901: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3045: Outer membrane polysaccharide binding protein for arabinan oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BT3044	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01902: Hypothetical protein, presumably involved in arabinan utilization	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3044: Hypothetical protein, presumably involved in arabinan utilization	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Hypothetical protein, presumably involved in arabinan utilization

CRON 4.
HTCS_Ara-2	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01904: Arabinan utilization hybrid two-component system, HTH AraC family	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04890: Arabinan utilization hybrid two-component system, HTH AraC family	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -76 score = 8.51453 sequence = TGAACGATTT-(12)-TAAAATATTT Gene: BACOVA_02667: Arabinan utilization hybrid two-component system, HTH AraC family	* Bacteroides plebeius DSM 17135 Site: position = -56 score = 6.77854 sequence = TGTATGATTT-(12)-TTCAATAAAT Gene: BACPLE_00182: Arabinan utilization hybrid two-component system, HTH AraC family	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -81 score = 8.92276 sequence = TGAATCATTT-(12)-TACAAGATTT Gene: BT3049: Arabinan utilization hybrid two-component system, HTH AraC family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0839: Arabinan utilization hybrid two-component system, HTH AraC family	Arabinan utilization hybrid two-component system, HTH AraC family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HTCS_Ara-2 - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --