Regulog HTCS_Ara-2 - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator (repressor) |
| Biological process: | Arabinan utilization |
| Effector: | Pectic galactan |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Pectic galactan
- By pathway - Arabinan utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 6 | 1 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 5 | 1 |
| Bacteroides eggerthii DSM 20697 | ||
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 5 | 3 |
| Bacteroides plebeius DSM 17135 | 6 | 2 |
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 6 | 3 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 5 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| BVU_0840 |
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Bacteroides cellulosilyticus DSM 14838 Site: position = -132 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BACCELL_01905: Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
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Bacteroides dorei DSM 17855 Site: position = -133 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BACDOR_04891: Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
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Bacteroides plebeius DSM 17135 Site: position = -107 score = 9.11537 sequence = TGAATGATTT-(12)-TGCATGATGT Gene: BACPLE_00181: Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
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Gene: BACUNI_03754: Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
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Bacteroides vulgatus ATCC 8482 Site: position = -133 score = 9.78853 sequence = TGCAAGATTT-(12)-TGCAAGATTT Gene: BVU_0840: Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
Conserved hypothetical protein, presumably involved in arabinogalactan utilization |
| susC_Ara-6 |
Gene: BACCELL_01906: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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Gene: BACDOR_04892: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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Gene: BACPLE_00180: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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Gene: BACUNI_03753: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
Gene: BVU_0841: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
TonB-dependent outer membrane transporter of arabinan oligosaccharides |
| susC_Ara-6 |
Gene: BACCELL_01907: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BACDOR_04893: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BACPLE_00179: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BACUNI_03752: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
Gene: BVU_0842: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
| BVU_0843 |
Gene: BACCELL_01908: Predicted endo-beta-1,6-galactanase |
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Gene: BACDOR_04894: Predicted endo-beta-1,6-galactanase |
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Gene: BACPLE_00178: Predicted endo-beta-1,6-galactanase |
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Gene: BACUNI_03751: Predicted endo-beta-1,6-galactanase |
Gene: BVU_0843: Predicted endo-beta-1,6-galactanase |
Predicted endo-beta-1,6-galactanase |
| bgaL |
Gene: BACCELL_01909: Beta-galactosidase |
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Gene: BACPLE_00177: Beta-galactosidase |
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Gene: BACUNI_03750: Beta-galactosidase |
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Beta-galactosidase |
| abnX |
Gene: BACCELL_01910: Putabtive arabinosidase, GH30 family |
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Gene: BACDOR_04895: Putabtive arabinosidase, GH30 family |
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Bacteroides ovatus ATCC 8483 Site: position = -50 score = 7.97598 sequence = TGTATGTTTT-(11)-TGTGTGATTT Gene: BACOVA_02661: Putabtive arabinosidase, GH30 family |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -105 score = 7.95405 sequence = TGCAAGATTT-(11)-TGGTCGTTTT Gene: BT3043: Putabtive arabinosidase, GH30 family |
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Gene: BVU_0844: Putabtive arabinosidase, GH30 family |
Putabtive arabinosidase, GH30 family |
| CRON 2. | ||||||||||||
| susC_Ara-5 |
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Bacteroides ovatus ATCC 8483 Site: position = -113 score = 9.73876 sequence = TGCATGATTT-(12)-TGCATGATTT Gene: BACOVA_02665: TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein |
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TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein |
| susD_Ara-5 |
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Gene: BACOVA_02664: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
| BACOVA_02663 |
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Gene: BACOVA_02663: Hypothetical protein, presumably involved in arabinan utilization |
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Hypothetical protein, presumably involved in arabinan utilization |
| CRON 3. | ||||||||||||
| sbp_Ara-4 |
Gene: BACCELL_01899: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -262 score = 8.98743 sequence = TGAATGATTC-(11)-TGAATGATTT Gene: BT3047: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding |
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Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding |
| susC_Ara-4 |
Gene: BACCELL_01900: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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Gene: BT3046: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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TonB-dependent outer membrane transporter of arabinan oligosaccharides |
| susD_Ara-4 |
Gene: BACCELL_01901: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BT3045: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
| BT3044 |
Gene: BACCELL_01902: Hypothetical protein, presumably involved in arabinan utilization |
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Gene: BT3044: Hypothetical protein, presumably involved in arabinan utilization |
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Hypothetical protein, presumably involved in arabinan utilization |
| CRON 4. | ||||||||||||
| HTCS_Ara-2 |
Gene: BACCELL_01904: Arabinan utilization hybrid two-component system, HTH AraC family |
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Gene: BACDOR_04890: Arabinan utilization hybrid two-component system, HTH AraC family |
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Bacteroides ovatus ATCC 8483 Site: position = -76 score = 8.51453 sequence = TGAACGATTT-(12)-TAAAATATTT Gene: BACOVA_02667: Arabinan utilization hybrid two-component system, HTH AraC family |
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Bacteroides plebeius DSM 17135 Site: position = -56 score = 6.77854 sequence = TGTATGATTT-(12)-TTCAATAAAT Gene: BACPLE_00182: Arabinan utilization hybrid two-component system, HTH AraC family |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -81 score = 8.92276 sequence = TGAATCATTT-(12)-TACAAGATTT Gene: BT3049: Arabinan utilization hybrid two-component system, HTH AraC family |
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Gene: BVU_0839: Arabinan utilization hybrid two-component system, HTH AraC family |
Arabinan utilization hybrid two-component system, HTH AraC family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |