Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HTCS_Rgu-1 regulog to Bacteroides thetaiotaomicron VPI-5482

Reference regulog properties
Source regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides thetaiotaomicron VPI-5482
Orthologous TF(s) BT4111, BT4124
Regulated genes 5
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacteroides thetaiotaomicron VPI-5482
Locus tag Position Score Sequence
Position: -105
Score: 9.1
Sequence: CAAAAAATACAC-(9)-TAAAAAATCCCA
Locus tag: BT4108
BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Bacteroides dorei DSM 17855 BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00863 -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC
Bacteroides ovatus ATCC 8483 BACOVA_04900 -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA
Bacteroides plebeius DSM 17135 BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Bacteroides stercoris ATCC 43183 BACSTE_03304 -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Bacteroides vulgatus ATCC 8482 BVU_1797 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Position: -127
Score: 9.4
Sequence: CAAAAAATACTA-(9)-CAAATATTACAC
Locus tag: BT4114
BT4114 -127 9.4 CAAAAAATACTA-(9)-CAAATATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Rgu-1
Ortholog function: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Bacteroides cellulosilyticus DSM 14838 BACCELL_03135 -126 9 CAAAAAATACCA-(9)-CAGATATTACAC
Bacteroides eggerthii DSM 20697 BACEGG_00870 -127 9.3 CAAAAAGTACCA-(9)-CAAAAATTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4114 -127 9.4 CAAAAAATACTA-(9)-CAAATATTACAC
Position: -119
Score: 9.8
Sequence: CAAAAAATACAA-(9)-CAAATATTGCAC
Locus tag: BT4116
BT4116 -119 9.8 CAAAAAATACAA-(9)-CAAATATTGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: plyC1
Ortholog function: Pectate lyase C
Bacteroides ovatus ATCC 8483 BACOVA_04907 -128 9.5 CAAAAAATACGA-(9)-CAAATATTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4116 -119 9.8 CAAAAAATACAA-(9)-CAAATATTGCAC
Position: -221
Score: 8.3
Sequence: AAAATAGTGCAC-(9)-CAAAAAGTCCCC
Locus tag: BT4119
BT4119 -221 8.3 AAAATAGTGCAC-(9)-CAAAAAGTCCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: plyC2
Ortholog function: Pectate lyase C
Bacteroides thetaiotaomicron VPI-5482 BT4119 -221 8.3 AAAATAGTGCAC-(9)-CAAAAAGTCCCC
Position: -265
Score: 9
Sequence: CAAAAAATACAC-(9)-CAATAACTCCAC
Locus tag: BT4187
BT4187 -265 9 CAAAAAATACAC-(9)-CAATAACTCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX1
Ortholog function: Polygalacturonase (EC 3.2.1.15 )
Bacteroides cellulosilyticus DSM 14838 BACCELL_03143 -273 8.8 CAAAAAATCCAC-(9)-CAAATTGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00876 -272 9.2 CAAAAAATACAC-(9)-CAATTAGTACAC
Bacteroides ovatus ATCC 8483 BACOVA_05040 -267 9 CAAAAAATACAC-(9)-CAATTAGTCCAC
Bacteroides stercoris ATCC 43183 BACSTE_03276 -205 8.4 CAAAAAATACAC-(9)-CAATTTGTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4187 -265 9 CAAAAAATACAC-(9)-CAATAACTCCAC
© 2009-2020 RegPrecise