Regulog HTCS_Rgu-1 - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - [Other]
By effector - Rhamogalacturonate oligosaccharides
By effector - Galacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	6	3
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855	10	4
Bacteroides eggerthii DSM 20697	6	3
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	11	3
Bacteroides plebeius DSM 17135	4	2
Bacteroides stercoris ATCC 43183	5	2
Bacteroides thetaiotaomicron VPI-5482	16	5
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482	10	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
susC_Rgu-1	2 Bacteroides cellulosilyticus DSM 14838* Site: position = -126 score = 9.01777 sequence = CAAAAAATACCA-(9)-CAGATATTACAC Gene: BACCELL_03135: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides Gene: BACCELL_03126: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -124 score = 9.0316 sequence = TAATAAATCCAC-(9)-TAAAAACTACAC Gene: BACDOR_03276: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	* Bacteroides eggerthii DSM 20697 Site: position = -127 score = 9.28353 sequence = CAAAAAGTACCA-(9)-CAAAAATTACAC Gene: BACEGG_00870: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -128 score = 9.53095 sequence = CAAAAAATACGA-(9)-CAAATATTGCAC Gene: BACOVA_04911: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides plebeius DSM 17135 Gene: BACPLE_03439: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03287: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -127 score = 9.434 sequence = CAAAAAATACTA-(9)-CAAATATTACAC Gene: BT4114: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -123 score = 9.0316 sequence = TAATAAATCCAC-(9)-TAAAAACTACAC Gene: BVU_1799: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
susD_Rgu-1	2 Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03134: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers Gene: BACCELL_03127: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03275: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00869: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_04910: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides plebeius DSM 17135 Gene: BACPLE_03440: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03286: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4113: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1800: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
BT4112	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03133: Predicted pectin lyase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00868: Predicted pectin lyase	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_04909: Predicted pectin lyase	Bacteroides plebeius DSM 17135 Gene: BACPLE_03441: Predicted pectin lyase	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03285: Predicted pectin lyase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4112: Predicted pectin lyase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted pectin lyase
pemC	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_04908: Pectinesterase (EC 3.1.1.11)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03442: Pectinesterase (EC 3.1.1.11)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03284: Pectinesterase (EC 3.1.1.11)	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Pectinesterase (EC 3.1.1.11)
plyC1	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	3 Bacteroides ovatus ATCC 8483 Gene: BACOVA_04907: Pectate lyase C Gene: BACOVA_04906: Pectate lyase C Gene: BACOVA_04905: Pectate lyase C	2 Bacteroides plebeius DSM 17135 Gene: BACPLE_03443: Pectate lyase C Gene: BACPLE_03444: Pectate lyase C	3 Bacteroides stercoris ATCC 43183 Gene: BACSTE_03283: Pectate lyase C Gene: BACSTE_03282: Pectate lyase C Gene: BACSTE_03281: Pectate lyase C	2 Bacteroides thetaiotaomicron VPI-5482* Site: position = -119 score = 9.8102 sequence = CAAAAAATACAA-(9)-CAAATATTGCAC Gene: BT4116: Pectate lyase C Gene: BT4115: Pectate lyase C	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Pectate lyase C

CRON 2.
plyC4	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -106 score = 8.85205 sequence = TAAAATATACGA-(9)-CAAATATTACAA Gene: BACDOR_03257: Pectate lyase C	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -106 score = 8.85205 sequence = TAAAATATACGA-(9)-CAAATATTACAA Gene: BVU_1813: Pectate lyase C	Pectate lyase C
ytaP	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03256: Predicted hydrolase	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1814: Predicted hydrolase	Predicted hydrolase
pemB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03123: Pectinesterase (EC 3.1.1.11)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03255: Pectinesterase (EC 3.1.1.11)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00866: Pectinesterase (EC 3.1.1.11)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_04902: Pectinesterase (EC 3.1.1.11)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03450: Pectinesterase (EC 3.1.1.11)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03301: Pectinesterase (EC 3.1.1.11)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4110: Pectinesterase (EC 3.1.1.11)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1815: Pectinesterase (EC 3.1.1.11)	Pectinesterase (EC 3.1.1.11)
rhiN	* Bacteroides cellulosilyticus DSM 14838 Site: position = -106 score = 9.26705 sequence = TAAATAATGCAC-(9)-CGAAAAGTACAC Gene: BACCELL_03119: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -105 score = 9.4358 sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC Gene: BACDOR_03278: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	* Bacteroides eggerthii DSM 20697 Site: position = -107 score = 9.72057 sequence = CAAAAAATGCAC-(9)-CAAAAAATGCAC Gene: BACEGG_00863: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -155 score = 8.92159 sequence = CAAAAAATGCAC-(9)-TAAAAAATCCCA Gene: BACOVA_04900: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	* Bacteroides plebeius DSM 17135 Site: position = -108 score = 7.72838 sequence = CAATTTTTATAC-(9)-TGAAAACTACAC Gene: BACPLE_03451: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	* Bacteroides stercoris ATCC 43183 Site: position = -107 score = 9.81701 sequence = CAAAAAATGCAC-(9)-CAAAAAGTGCAC Gene: BACSTE_03304: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -105 score = 9.08411 sequence = CAAAAAATACAC-(9)-TAAAAAATCCCA Gene: BT4108: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -105 score = 9.4358 sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC Gene: BVU_1797: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rgaE	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03120: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03277: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00864: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_04901: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03303: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4109: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1798: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)	Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
BACCELL_03124	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03124: Predicted deacetylase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_03449: Predicted deacetylase	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03300: Predicted deacetylase	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted deacetylase

CRON 3.
plyC2	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -221 score = 8.30822 sequence = AAAATAGTGCAC-(9)-CAAAAAGTCCCC Gene: BT4119: Pectate lyase C	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Pectate lyase C
BT4120	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4120: Predicted pectin lyase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted pectin lyase
susC_Rgu-2	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00647: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4121: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_2913: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides	TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
susD_Rgu-2	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00648: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4122: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_2914: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
pehX1	* Bacteroides cellulosilyticus DSM 14838 Site: position = -273 score = 8.76184 sequence = CAAAAAATCCAC-(9)-CAAATTGTGCAC Gene: BACCELL_03143: Polygalacturonase (EC 3.2.1.15 )	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -237 score = 9.50495 sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC Gene: BACDOR_03070: Polygalacturonase (EC 3.2.1.15 )	* Bacteroides eggerthii DSM 20697 Site: position = -272 score = 9.17678 sequence = CAAAAAATACAC-(9)-CAATTAGTACAC Gene: BACEGG_00876: Polygalacturonase (EC 3.2.1.15 )	Bacteroides fragilis NCTC 9343	2 Bacteroides ovatus ATCC 8483* Site: position = -267 score = 8.96233 sequence = CAAAAAATACAC-(9)-CAATTAGTCCAC Gene: BACOVA_05040: Polygalacturonase (EC 3.2.1.15 ) Gene: BACOVA_04926: Polygalacturonase (EC 3.2.1.15 )	Bacteroides plebeius DSM 17135 Gene: BACPLE_03445: Polygalacturonase (EC 3.2.1.15 )	* Bacteroides stercoris ATCC 43183 Site: position = -205 score = 8.43367 sequence = CAAAAAATACAC-(9)-CAATTTGTACAC Gene: BACSTE_03276: Polygalacturonase (EC 3.2.1.15 )	2 Bacteroides thetaiotaomicron VPI-5482* Site: position = -265 score = 9.00761 sequence = CAAAAAATACAC-(9)-CAATAACTCCAC Gene: BT4187: Polygalacturonase (EC 3.2.1.15 ) Gene: BT4123: Polygalacturonase (EC 3.2.1.15 )	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -237 score = 9.50495 sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC Gene: BVU_1985: Polygalacturonase (EC 3.2.1.15 )	Polygalacturonase (EC 3.2.1.15 )
GH88	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03139: Glycosyl hydrolase, family 88	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03071: Glycosyl hydrolase, family 88	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05039: Glycosyl hydrolase, family 88	* Bacteroides plebeius DSM 17135 Site: position = -222 score = 7.02663 sequence = CAGTTTTTTCAC-(9)-CAAAAATTGCAA Gene: BACPLE_03118: Glycosyl hydrolase, family 88	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03277: Glycosyl hydrolase, family 88	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4186: Glycosyl hydrolase, family 88	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1984: Glycosyl hydrolase, family 88	Glycosyl hydrolase, family 88
xylB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03138: xylosidase/arabinosidase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03072: xylosidase/arabinosidase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00873: xylosidase/arabinosidase	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05037: xylosidase/arabinosidase	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_03278: xylosidase/arabinosidase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4185: xylosidase/arabinosidase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1983: xylosidase/arabinosidase	xylosidase/arabinosidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HTCS_Rgu-1 - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --