Regulog HTCS_Rgu-1 - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Rhamogalacturonate oligosaccharides
- By effector - Galacturonate oligosaccharides
- By pathway - Rhamnogalacturonides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 6 | 3 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 10 | 4 |
| Bacteroides eggerthii DSM 20697 | 6 | 3 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 11 | 3 |
| Bacteroides plebeius DSM 17135 | 4 | 2 |
| Bacteroides stercoris ATCC 43183 | 5 | 2 |
| Bacteroides thetaiotaomicron VPI-5482 | 16 | 5 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 10 | 4 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| susC_Rgu-1 |
*2
Bacteroides cellulosilyticus DSM 14838 Site: position = -126 score = 9.01777 sequence = CAAAAAATACCA-(9)-CAGATATTACAC Gene: BACCELL_03135: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides Gene: BACCELL_03126: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
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*
Bacteroides dorei DSM 17855 Site: position = -124 score = 9.0316 sequence = TAATAAATCCAC-(9)-TAAAAACTACAC Gene: BACDOR_03276: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
*
Bacteroides eggerthii DSM 20697 Site: position = -127 score = 9.28353 sequence = CAAAAAGTACCA-(9)-CAAAAATTACAC Gene: BACEGG_00870: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -128 score = 9.53095 sequence = CAAAAAATACGA-(9)-CAAATATTGCAC Gene: BACOVA_04911: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
Gene: BACPLE_03439: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
Gene: BACSTE_03287: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -127 score = 9.434 sequence = CAAAAAATACTA-(9)-CAAATATTACAC Gene: BT4114: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
|
*
Bacteroides vulgatus ATCC 8482 Site: position = -123 score = 9.0316 sequence = TAATAAATCCAC-(9)-TAAAAACTACAC Gene: BVU_1799: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
| susD_Rgu-1 |
2
Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03134: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers Gene: BACCELL_03127: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
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Gene: BACDOR_03275: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
Gene: BACEGG_00869: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
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Gene: BACOVA_04910: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
Gene: BACPLE_03440: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
Gene: BACSTE_03286: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
Gene: BT4113: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
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Gene: BVU_1800: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers |
| BT4112 |
Gene: BACCELL_03133: Predicted pectin lyase |
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Gene: BACEGG_00868: Predicted pectin lyase |
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Gene: BACOVA_04909: Predicted pectin lyase |
Gene: BACPLE_03441: Predicted pectin lyase |
Gene: BACSTE_03285: Predicted pectin lyase |
Gene: BT4112: Predicted pectin lyase |
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Predicted pectin lyase |
| pemC |
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Gene: BACOVA_04908: Pectinesterase (EC 3.1.1.11) |
Gene: BACPLE_03442: Pectinesterase (EC 3.1.1.11) |
Gene: BACSTE_03284: Pectinesterase (EC 3.1.1.11) |
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Pectinesterase (EC 3.1.1.11) |
| plyC1 |
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3
Bacteroides ovatus ATCC 8483 Gene: BACOVA_04907: Pectate lyase C Gene: BACOVA_04906: Pectate lyase C Gene: BACOVA_04905: Pectate lyase C |
2
Bacteroides plebeius DSM 17135 Gene: BACPLE_03443: Pectate lyase C Gene: BACPLE_03444: Pectate lyase C |
3
Bacteroides stercoris ATCC 43183 Gene: BACSTE_03283: Pectate lyase C Gene: BACSTE_03282: Pectate lyase C Gene: BACSTE_03281: Pectate lyase C |
*2
Bacteroides thetaiotaomicron VPI-5482 Site: position = -119 score = 9.8102 sequence = CAAAAAATACAA-(9)-CAAATATTGCAC Gene: BT4116: Pectate lyase C Gene: BT4115: Pectate lyase C |
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Pectate lyase C |
| CRON 2. | ||||||||||||
| plyC4 |
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*
Bacteroides dorei DSM 17855 Site: position = -106 score = 8.85205 sequence = TAAAATATACGA-(9)-CAAATATTACAA Gene: BACDOR_03257: Pectate lyase C |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -106 score = 8.85205 sequence = TAAAATATACGA-(9)-CAAATATTACAA Gene: BVU_1813: Pectate lyase C |
Pectate lyase C |
| ytaP |
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Gene: BACDOR_03256: Predicted hydrolase |
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Gene: BVU_1814: Predicted hydrolase |
Predicted hydrolase |
| pemB |
Gene: BACCELL_03123: Pectinesterase (EC 3.1.1.11) |
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Gene: BACDOR_03255: Pectinesterase (EC 3.1.1.11) |
Gene: BACEGG_00866: Pectinesterase (EC 3.1.1.11) |
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Gene: BACOVA_04902: Pectinesterase (EC 3.1.1.11) |
Gene: BACPLE_03450: Pectinesterase (EC 3.1.1.11) |
Gene: BACSTE_03301: Pectinesterase (EC 3.1.1.11) |
Gene: BT4110: Pectinesterase (EC 3.1.1.11) |
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Gene: BVU_1815: Pectinesterase (EC 3.1.1.11) |
Pectinesterase (EC 3.1.1.11) |
| rhiN |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -106 score = 9.26705 sequence = TAAATAATGCAC-(9)-CGAAAAGTACAC Gene: BACCELL_03119: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
|
*
Bacteroides dorei DSM 17855 Site: position = -105 score = 9.4358 sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC Gene: BACDOR_03278: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
*
Bacteroides eggerthii DSM 20697 Site: position = -107 score = 9.72057 sequence = CAAAAAATGCAC-(9)-CAAAAAATGCAC Gene: BACEGG_00863: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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*
Bacteroides ovatus ATCC 8483 Site: position = -155 score = 8.92159 sequence = CAAAAAATGCAC-(9)-TAAAAAATCCCA Gene: BACOVA_04900: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
*
Bacteroides plebeius DSM 17135 Site: position = -108 score = 7.72838 sequence = CAATTTTTATAC-(9)-TGAAAACTACAC Gene: BACPLE_03451: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
*
Bacteroides stercoris ATCC 43183 Site: position = -107 score = 9.81701 sequence = CAAAAAATGCAC-(9)-CAAAAAGTGCAC Gene: BACSTE_03304: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -105 score = 9.08411 sequence = CAAAAAATACAC-(9)-TAAAAAATCCCA Gene: BT4108: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -105 score = 9.4358 sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC Gene: BVU_1797: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| rgaE |
Gene: BACCELL_03120: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BACDOR_03277: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
Gene: BACEGG_00864: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BACOVA_04901: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BACSTE_03303: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
Gene: BT4109: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BVU_1798: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
| BACCELL_03124 |
Gene: BACCELL_03124: Predicted deacetylase |
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Gene: BACPLE_03449: Predicted deacetylase |
Gene: BACSTE_03300: Predicted deacetylase |
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Predicted deacetylase |
| CRON 3. | ||||||||||||
| plyC2 |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -221 score = 8.30822 sequence = AAAATAGTGCAC-(9)-CAAAAAGTCCCC Gene: BT4119: Pectate lyase C |
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Pectate lyase C |
| BT4120 |
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Gene: BT4120: Predicted pectin lyase |
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Predicted pectin lyase |
| susC_Rgu-2 |
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Gene: BACEGG_00647: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
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Gene: BT4121: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
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Gene: BVU_2913: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
| susD_Rgu-2 |
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Gene: BACEGG_00648: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
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Gene: BT4122: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
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Gene: BVU_2914: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
| pehX1 |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -273 score = 8.76184 sequence = CAAAAAATCCAC-(9)-CAAATTGTGCAC Gene: BACCELL_03143: Polygalacturonase (EC 3.2.1.15 ) |
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*
Bacteroides dorei DSM 17855 Site: position = -237 score = 9.50495 sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC Gene: BACDOR_03070: Polygalacturonase (EC 3.2.1.15 ) |
*
Bacteroides eggerthii DSM 20697 Site: position = -272 score = 9.17678 sequence = CAAAAAATACAC-(9)-CAATTAGTACAC Gene: BACEGG_00876: Polygalacturonase (EC 3.2.1.15 ) |
|
*2
Bacteroides ovatus ATCC 8483 Site: position = -267 score = 8.96233 sequence = CAAAAAATACAC-(9)-CAATTAGTCCAC Gene: BACOVA_05040: Polygalacturonase (EC 3.2.1.15 ) Gene: BACOVA_04926: Polygalacturonase (EC 3.2.1.15 ) |
Gene: BACPLE_03445: Polygalacturonase (EC 3.2.1.15 ) |
*
Bacteroides stercoris ATCC 43183 Site: position = -205 score = 8.43367 sequence = CAAAAAATACAC-(9)-CAATTTGTACAC Gene: BACSTE_03276: Polygalacturonase (EC 3.2.1.15 ) |
*2
Bacteroides thetaiotaomicron VPI-5482 Site: position = -265 score = 9.00761 sequence = CAAAAAATACAC-(9)-CAATAACTCCAC Gene: BT4187: Polygalacturonase (EC 3.2.1.15 ) Gene: BT4123: Polygalacturonase (EC 3.2.1.15 ) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -237 score = 9.50495 sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC Gene: BVU_1985: Polygalacturonase (EC 3.2.1.15 ) |
Polygalacturonase (EC 3.2.1.15 ) |
| GH88 |
Gene: BACCELL_03139: Glycosyl hydrolase, family 88 |
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Gene: BACDOR_03071: Glycosyl hydrolase, family 88 |
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Gene: BACOVA_05039: Glycosyl hydrolase, family 88 |
*
Bacteroides plebeius DSM 17135 Site: position = -222 score = 7.02663 sequence = CAGTTTTTTCAC-(9)-CAAAAATTGCAA Gene: BACPLE_03118: Glycosyl hydrolase, family 88 |
Gene: BACSTE_03277: Glycosyl hydrolase, family 88 |
Gene: BT4186: Glycosyl hydrolase, family 88 |
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Gene: BVU_1984: Glycosyl hydrolase, family 88 |
Glycosyl hydrolase, family 88 |
| xylB |
Gene: BACCELL_03138: xylosidase/arabinosidase |
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Gene: BACDOR_03072: xylosidase/arabinosidase |
Gene: BACEGG_00873: xylosidase/arabinosidase |
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Gene: BACOVA_05037: xylosidase/arabinosidase |
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Gene: BACSTE_03278: xylosidase/arabinosidase |
Gene: BT4185: xylosidase/arabinosidase |
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Gene: BVU_1983: xylosidase/arabinosidase |
xylosidase/arabinosidase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |