Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HTCS_Rgu-1 in Bacteroides dorei DSM 17855

Properties
Regulator type: Transcription factor
TF locus tag: BACDOR_03254
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Regulog: HTCS_Rgu-1 - Bacteroidaceae
Statistics of regulated genes:
- Genes 10
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -106
Score: 8.9
Sequence: TAAAATATACGA-(9)-CAAATATTACAA
Locus tag: BACDOR_03257
Name: plyC4
Funciton: Pectate lyase C
Locus tag: BACDOR_03256
Name: ytaP
Funciton: Predicted hydrolase
Locus tag: BACDOR_03255
Name: pemB
Funciton: Pectinesterase (EC 3.1.1.11)
plyC4
Pectate lyase C
ytaP
Predicted hydrolase
pemB
Pectinesterase (EC 3.1.1.11)

Position: -105
Score: 9.4
Sequence: CAAATAATACAC-(9)-TGAAAAGTGCAC
Locus tag: BACDOR_03278
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACDOR_03277
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rgaE
Rhamnogalacturonan acetylesterase (EC 3.1.1.86)

Position: -124
Score: 9
Sequence: TAATAAATCCAC-(9)-TAAAAACTACAC
Locus tag: BACDOR_03276
Name: susC_Rgu-1
Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BACDOR_03275
Name: susD_Rgu-1
Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
susC_Rgu-1
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
susD_Rgu-1
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers

Position: -237
Score: 9.5
Sequence: CAAAAAATCCAC-(9)-CAAATAGTGCAC
Locus tag: BACDOR_03070
Name: pehX1
Funciton: Polygalacturonase (EC 3.2.1.15 )
Locus tag: BACDOR_03071
Name: GH88
Funciton: Glycosyl hydrolase, family 88
Locus tag: BACDOR_03072
Name: xylB
Funciton: xylosidase/arabinosidase
pehX1
Polygalacturonase (EC 3.2.1.15 )
GH88
Glycosyl hydrolase, family 88
xylB
xylosidase/arabinosidase
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD