Regulon of HTCS_Rgu-1 in Bacteroides dorei DSM 17855

Properties
Regulator type:	Transcription factor
TF locus tag:	BACDOR_03254
Regulator family:	[Other]
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Regulog:	HTCS_Rgu-1 - Bacteroidaceae
Statistics of regulated genes:
- Genes	10
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - [Other]
By effector - Rhamogalacturonate oligosaccharides
By effector - Galacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Regulated operons
	Locus Tag	Name	Function
Position: -106 Score: 8.9 Sequence: TAAAATATACGA-(9)-CAAATATTACAA Locus tag: BACDOR_03257 Name: plyC4 Funciton: Pectate lyase C Locus tag: BACDOR_03256 Name: ytaP Funciton: Predicted hydrolase Locus tag: BACDOR_03255 Name: pemB Funciton: Pectinesterase (EC 3.1.1.11)
	BACDOR_03257	plyC4	Pectate lyase C
	BACDOR_03256	ytaP	Predicted hydrolase
	BACDOR_03255	pemB	Pectinesterase (EC 3.1.1.11)
Position: -105 Score: 9.4 Sequence: CAAATAATACAC-(9)-TGAAAAGTGCAC Locus tag: BACDOR_03278 Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) Locus tag: BACDOR_03277 Name: rgaE Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
	BACDOR_03278	rhiN	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	BACDOR_03277	rgaE	Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Position: -124 Score: 9 Sequence: TAATAAATCCAC-(9)-TAAAAACTACAC Locus tag: BACDOR_03276 Name: susC_Rgu-1 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides Locus tag: BACDOR_03275 Name: susD_Rgu-1 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
	BACDOR_03276	susC_Rgu-1	TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
	BACDOR_03275	susD_Rgu-1	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
Position: -237 Score: 9.5 Sequence: CAAAAAATCCAC-(9)-CAAATAGTGCAC Locus tag: BACDOR_03070 Name: pehX1 Funciton: Polygalacturonase (EC 3.2.1.15 ) Locus tag: BACDOR_03071 Name: GH88 Funciton: Glycosyl hydrolase, family 88 Locus tag: BACDOR_03072 Name: xylB Funciton: xylosidase/arabinosidase
	BACDOR_03070	pehX1	Polygalacturonase (EC 3.2.1.15 )
	BACDOR_03071	GH88	Glycosyl hydrolase, family 88
	BACDOR_03072	xylB	xylosidase/arabinosidase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD