Regulon of HTCS_Rgu-1 in Bacteroides ovatus ATCC 8483
| Regulator type: | Transcription factor |
| TF locus tag: | BACOVA_04904, BACOVA_04931 |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides |
| Regulog: | HTCS_Rgu-1 - Bacteroidaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Rhamogalacturonate oligosaccharides
- By effector - Galacturonate oligosaccharides
- By pathway - Rhamnogalacturonides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -155
Score: 8.9 Sequence: CAAAAAATGCAC-(9)-TAAAAAATCCCA
Locus tag: BACOVA_04900
Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACOVA_04901
Name: rgaE Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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rhiN
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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rgaE
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Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
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Position: -128
Score: 9.5 Sequence: CAAAAAATACGA-(9)-CAAATATTGCAC
Locus tag: BACOVA_04911
Name: susC_Rgu-1 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BACOVA_04910
Name: susD_Rgu-1 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
Locus tag: BACOVA_04909
Name: BT4112 Funciton: Predicted pectin lyase
Locus tag: BACOVA_04908
Name: pemC Funciton: Pectinesterase (EC 3.1.1.11)
Locus tag: BACOVA_04907
Name: plyC1 Funciton: Pectate lyase C
Locus tag: BACOVA_04906
Name: plyC1 Funciton: Pectate lyase C
Locus tag: BACOVA_04905
Name: plyC1 Funciton: Pectate lyase C |
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susC_Rgu-1
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
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susD_Rgu-1
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
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BT4112
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Predicted pectin lyase
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pemC
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Pectinesterase (EC 3.1.1.11)
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plyC1
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Pectate lyase C
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plyC1
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Pectate lyase C
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plyC1
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Pectate lyase C
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Position: -267
Score: 9 Sequence: CAAAAAATACAC-(9)-CAATTAGTCCAC
Locus tag: BACOVA_05040
Name: pehX1 Funciton: Polygalacturonase (EC 3.2.1.15 )
Locus tag: BACOVA_05039
Name: GH88 Funciton: Glycosyl hydrolase, family 88 |
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pehX1
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Polygalacturonase (EC 3.2.1.15 )
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GH88
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Glycosyl hydrolase, family 88
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |