Regulon of HTCS_Rgu-1 in Bacteroides thetaiotaomicron VPI-5482

Properties
Regulator type:	Transcription factor
TF locus tag:	BT4111, BT4124
Regulator family:	[Other]
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Regulog:	HTCS_Rgu-1 - Bacteroidaceae
Statistics of regulated genes:
- Genes	16
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - [Other]
By effector - Rhamogalacturonate oligosaccharides
By effector - Galacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Regulated operons
	Locus Tag	Name	Function
Position: -105 Score: 9.1 Sequence: CAAAAAATACAC-(9)-TAAAAAATCCCA Locus tag: BT4108 Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) Locus tag: BT4109 Name: rgaE Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) Locus tag: BT4110 Name: pemB Funciton: Pectinesterase (EC 3.1.1.11)
	BT4108	rhiN	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	BT4109	rgaE	Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
	BT4110	pemB	Pectinesterase (EC 3.1.1.11)
Position: -265 Score: 9 Sequence: CAAAAAATACAC-(9)-CAATAACTCCAC Locus tag: BT4187 Name: pehX1 Funciton: Polygalacturonase (EC 3.2.1.15 ) Locus tag: BT4186 Name: GH88 Funciton: Glycosyl hydrolase, family 88 Locus tag: BT4185 Name: xylB Funciton: xylosidase/arabinosidase
	BT4187	pehX1	Polygalacturonase (EC 3.2.1.15 )
	BT4186	GH88	Glycosyl hydrolase, family 88
	BT4185	xylB	xylosidase/arabinosidase
Position: -221 Score: 8.3 Sequence: AAAATAGTGCAC-(9)-CAAAAAGTCCCC Locus tag: BT4119 Name: plyC2 Funciton: Pectate lyase C Locus tag: BT4120 Name: BT4120 Funciton: Predicted pectin lyase Locus tag: BT4121 Name: susC_Rgu-2 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides Locus tag: BT4122 Name: susD_Rgu-2 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides Locus tag: BT4123 Name: pehX1 Funciton: Polygalacturonase (EC 3.2.1.15 )
	BT4119	plyC2	Pectate lyase C
	BT4120	BT4120	Predicted pectin lyase
	BT4121	susC_Rgu-2	TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
	BT4122	susD_Rgu-2	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
	BT4123	pehX1	Polygalacturonase (EC 3.2.1.15 )
Position: -119 Score: 9.8 Sequence: CAAAAAATACAA-(9)-CAAATATTGCAC Locus tag: BT4116 Name: plyC1 Funciton: Pectate lyase C Locus tag: BT4115 Name: plyC1 Funciton: Pectate lyase C
	BT4116	plyC1	Pectate lyase C
	BT4115	plyC1	Pectate lyase C
Position: -127 Score: 9.4 Sequence: CAAAAAATACTA-(9)-CAAATATTACAC Locus tag: BT4114 Name: susC_Rgu-1 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides Locus tag: BT4113 Name: susD_Rgu-1 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers Locus tag: BT4112 Name: BT4112 Funciton: Predicted pectin lyase
	BT4114	susC_Rgu-1	TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
	BT4113	susD_Rgu-1	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
	BT4112	BT4112	Predicted pectin lyase

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of HTCS_Rgu-1 in Bacteroides thetaiotaomicron VPI-5482

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --