Statistics of regulated genes

Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	31	11
Bacteroides coprophilus DSM 18228	3	3
Bacteroides dorei DSM 17855	24	10
Bacteroides eggerthii DSM 20697	26	11
Bacteroides fragilis NCTC 9343	26	11
Bacteroides ovatus ATCC 8483	31	11
Bacteroides plebeius DSM 17135	13	4
Bacteroides stercoris ATCC 43183	15	9
Bacteroides thetaiotaomicron VPI-5482	39	13
Bacteroides uniformis ATCC 8492	30	12
Bacteroides vulgatus ATCC 8482	24	10

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes												Function
CRON 1.
xylR	* Bacteroides cellulosilyticus DSM 14838 Site: position = -83 score = 4.8625 sequence = AATAGTGCTTTATAACATAATA Gene: BACCELL_04758: Predicted regulator of xylose utilization, NrtR family	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -34 score = 4.79014 sequence = AATAGTGTTTTAGAACATAATA Gene: BACDOR_00865: Predicted regulator of xylose utilization, NrtR family	* Bacteroides eggerthii DSM 20697 Site: position = -92 score = 4.77237 sequence = AATAATGCTTTGTAACATATCA Gene: BACEGG_02642: Predicted regulator of xylose utilization, NrtR family	* Bacteroides fragilis NCTC 9343 Site: position = -81 score = 4.56893 sequence = AACAATGCTTTATAGCATATTA Gene: BF2354: Predicted regulator of xylose utilization, NrtR family	* Bacteroides ovatus ATCC 8483 Site: position = -80 score = 4.20374 sequence = AACAATGTTTTATAGCATGTTT Gene: BACOVA_02532: Predicted regulator of xylose utilization, NrtR family	Bacteroides plebeius DSM 17135 Gene: BACPLE_02263: Predicted regulator of xylose utilization, NrtR family	* Bacteroides stercoris ATCC 43183 Site: position = -92 score = 4.27792 sequence = AATAATGCTTTATAACATTGTA Gene: BACSTE_01380: Predicted regulator of xylose utilization, NrtR family	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -81 score = 4.23108 sequence = AACAATGTTTTATAGCATGTCA Gene: BT0791: Predicted regulator of xylose utilization, NrtR family	* Bacteroides uniformis ATCC 8492 Site: position = -92 score = 4.09714 sequence = AATAATGCTTTATAATATTATA Gene: BACUNI_00695: Predicted regulator of xylose utilization, NrtR family	* Bacteroides vulgatus ATCC 8482 Site: position = -100 score = 4.54006 sequence = AATAGTGTTTTGGAACATAATA Gene: BVU_3955: Predicted regulator of xylose utilization, NrtR family	Predicted regulator of xylose utilization, NrtR family
xylB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04759: Xylulose kinase (EC 2.7.1.17)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00866: Xylulose kinase (EC 2.7.1.17)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02643: Xylulose kinase (EC 2.7.1.17)	Bacteroides fragilis NCTC 9343 Gene: BF2355: Xylulose kinase (EC 2.7.1.17)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02533: Xylulose kinase (EC 2.7.1.17)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02264: Xylulose kinase (EC 2.7.1.17)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01381: Xylulose kinase (EC 2.7.1.17)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0792: Xylulose kinase (EC 2.7.1.17)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00694: Xylulose kinase (EC 2.7.1.17)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3954: Xylulose kinase (EC 2.7.1.17)	Xylulose kinase (EC 2.7.1.17)
xylA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04760: Xylose isomerase (EC 5.3.1.5)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00867: Xylose isomerase (EC 5.3.1.5)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02644: Xylose isomerase (EC 5.3.1.5)	Bacteroides fragilis NCTC 9343 Gene: BF2356: Xylose isomerase (EC 5.3.1.5)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02534: Xylose isomerase (EC 5.3.1.5)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02265: Xylose isomerase (EC 5.3.1.5)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01383: Xylose isomerase (EC 5.3.1.5)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0793: Xylose isomerase (EC 5.3.1.5)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00693: Xylose isomerase (EC 5.3.1.5)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3953: Xylose isomerase (EC 5.3.1.5)	Xylose isomerase (EC 5.3.1.5)
xylE	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04761: D-xylose proton-symporter XylE	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00759: D-xylose proton-symporter XylE	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02645: D-xylose proton-symporter XylE	Bacteroides fragilis NCTC 9343 Gene: BF2357: D-xylose proton-symporter XylE	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02535: D-xylose proton-symporter XylE	Bacteroides plebeius DSM 17135 Gene: BACPLE_02266: D-xylose proton-symporter XylE	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01384: D-xylose proton-symporter XylE	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0794: D-xylose proton-symporter XylE	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00692: D-xylose proton-symporter XylE	Bacteroides vulgatus ATCC 8482 Gene: BVU_4073: D-xylose proton-symporter XylE	D-xylose proton-symporter XylE
CRON 2.
nupG	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03457: Nucleoside permease NupG	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00774: Nucleoside permease NupG	Bacteroides dorei DSM 17855 Gene: BACDOR_01556: Nucleoside permease NupG	* Bacteroides eggerthii DSM 20697 Site: position = -193 score = 5.82074 sequence = GACTATGTTATATAACATAAAA Gene: BACEGG_01333: Nucleoside permease NupG	Bacteroides fragilis NCTC 9343 Gene: BF0944: Nucleoside permease NupG	* Bacteroides ovatus ATCC 8483 Site: position = -269 score = 5.63672 sequence = CATTATGTTGTATAACATAAAC Gene: BACOVA_05132: Nucleoside permease NupG	Bacteroides plebeius DSM 17135 Gene: BACPLE_01143: Nucleoside permease NupG	* Bacteroides stercoris ATCC 43183 Site: position = -230 score = 5.67212 sequence = CATTATGTTTTATAACATAAAT Gene: BACSTE_03522: Nucleoside permease NupG	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -271 score = 5.73915 sequence = CATTATGTTCTATAACATAAAA Gene: BT4330: Nucleoside permease NupG	* Bacteroides uniformis ATCC 8492 Site: position = -245 score = 5.03377 sequence = CAGCATGTTATATAACATAAAC Gene: BACUNI_01546: Nucleoside permease NupG	Bacteroides vulgatus ATCC 8482 Gene: BVU_3613: Nucleoside permease NupG	Nucleoside permease NupG
CRON 3.
serB	* Bacteroides cellulosilyticus DSM 14838 Site: position = -163 score = 5.4883 sequence = TTTCATGTTATATAACATGTTT Gene: BACCELL_04825: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides coprophilus DSM 18228 Site: position = -134 score = 5.5879 sequence = AATTATGCTTTTAAACATAAAT Gene: BACCOPRO_01694: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides dorei DSM 17855 Site: position = -116 score = 6.05616 sequence = AAATATGTTATATAGCATAAAA Gene: BACDOR_02848: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides eggerthii DSM 20697 Site: position = -74 score = 6.34032 sequence = TTTTATGTTATTTAGCATAAAA Gene: BACEGG_02676: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides fragilis NCTC 9343 Site: position = -71 score = 6.18331 sequence = TTTTATGTTATTTAGCATAAAT Gene: BF2389: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides ovatus ATCC 8483 Site: position = -66 score = 6.34032 sequence = TTTTATGTTATTTAGCATAAAA Gene: BACOVA_02567: Phosphoserine phosphatase (EC 3.1.3.3)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00754: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides stercoris ATCC 43183 Site: position = -74 score = 6.34032 sequence = TTTTATGTTATTTAGCATAAAA Gene: BACSTE_01424: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -67 score = 6.34032 sequence = TTTTATGTTATTTAGCATAAAA Gene: BT0832: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides uniformis ATCC 8492 Site: position = -75 score = 6.18331 sequence = TTTTATGTTATTTAGCATAAAT Gene: BACUNI_00649: Phosphoserine phosphatase (EC 3.1.3.3)	* Bacteroides vulgatus ATCC 8482 Site: position = -116 score = 6.05616 sequence = AAATATGTTATATAGCATAAAA Gene: BVU_3158: Phosphoserine phosphatase (EC 3.1.3.3)	Phosphoserine phosphatase (EC 3.1.3.3)
CRON 4.
PF01694	* Bacteroides cellulosilyticus DSM 14838 Site: position = -196 score = 5.03588 sequence = TAATATGTTACACAAAAGATAT Site: position = -62 score = 5.79697 sequence = TTTTCTGTTATAGAACAGAATT Gene: BACCELL_02471: Peptidase S54, rhomboid domain	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00242: Peptidase S54, rhomboid domain	* Bacteroides dorei DSM 17855 Site: position = -71 score = 6.17781 sequence = TTTTCTGTTATATAACAGAATA Gene: BACDOR_01705: Peptidase S54, rhomboid domain	* Bacteroides eggerthii DSM 20697 Site: position = -188 score = 5.34989 sequence = TAATATGTTACACAAAAGAAAA Site: position = -61 score = 5.79697 sequence = TTTTCTGTTATAGAACAGAATT Gene: BACEGG_03101: Peptidase S54, rhomboid domain	* Bacteroides fragilis NCTC 9343 Site: position = -227 score = 5.04957 sequence = ATATATGTTACACAAAAGATAT Site: position = -105 score = 5.73991 sequence = TTTTCTGTTGTAGAACAGAATT Gene: BF4221: Peptidase S54, rhomboid domain	* Bacteroides ovatus ATCC 8483 Site: position = -195 score = 5.03588 sequence = ATATATGTTACACAAAAGATTA Site: position = -66 score = 5.41387 sequence = TTTCATGCTTTAAAACAGAATT Gene: BACOVA_02079: Peptidase S54, rhomboid domain	Bacteroides plebeius DSM 17135 Gene: BACPLE_00187: Peptidase S54, rhomboid domain	* Bacteroides stercoris ATCC 43183 Site: position = -188 score = 4.34752 sequence = TTAATTGTTACACAAAAGAAAA Site: position = -61 score = 5.79697 sequence = TTTTCTGTTATAGAACAGAATT Gene: BACSTE_02140: Peptidase S54, rhomboid domain	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -192 score = 4.87887 sequence = ATATATGTTACACAAAAGATTT Site: position = -69 score = 4.98217 sequence = TTCCATGCTTTAAAACAGAATT Gene: BT2831: Peptidase S54, rhomboid domain	* Bacteroides uniformis ATCC 8492 Site: position = -230 score = 5.03588 sequence = TAATATGTTACACAAAAGATAT Site: position = -97 score = 5.79697 sequence = TTTTCTGTTATAGAACAGAATT Gene: BACUNI_03999: Peptidase S54, rhomboid domain	* Bacteroides vulgatus ATCC 8482 Site: position = -71 score = 6.17781 sequence = TTTTCTGTTATATAACAGAATA Gene: BVU_0995: Peptidase S54, rhomboid domain	Peptidase S54, rhomboid domain
PF01694	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_02470: Peptidase S54, rhomboid domain	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00243: Peptidase S54, rhomboid domain	Bacteroides dorei DSM 17855 Gene: BACDOR_01704: Peptidase S54, rhomboid domain	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03102: Peptidase S54, rhomboid domain	Bacteroides fragilis NCTC 9343 Gene: BF4222: Peptidase S54, rhomboid domain	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02080: Peptidase S54, rhomboid domain	Bacteroides plebeius DSM 17135 Gene: BACPLE_00186: Peptidase S54, rhomboid domain	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02141: Peptidase S54, rhomboid domain	Bacteroides thetaiotaomicron VPI-5482 Gene: BT2832: Peptidase S54, rhomboid domain	Bacteroides uniformis ATCC 8492 Gene: BACUNI_04000: Peptidase S54, rhomboid domain	Bacteroides vulgatus ATCC 8482 Gene: BVU_0994: Peptidase S54, rhomboid domain	Peptidase S54, rhomboid domain
PF03372	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_02469: Endonuclease/exonuclease/phosphatase	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00244: Endonuclease/exonuclease/phosphatase	Bacteroides dorei DSM 17855 Gene: BACDOR_01703: Endonuclease/exonuclease/phosphatase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03103: Endonuclease/exonuclease/phosphatase	Bacteroides fragilis NCTC 9343 Gene: BF4223: Endonuclease/exonuclease/phosphatase	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02081: Endonuclease/exonuclease/phosphatase	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02142: Endonuclease/exonuclease/phosphatase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT2833: Endonuclease/exonuclease/phosphatase	Bacteroides uniformis ATCC 8492 Gene: BACUNI_04001: Endonuclease/exonuclease/phosphatase	Bacteroides vulgatus ATCC 8482 Gene: BVU_0993: Endonuclease/exonuclease/phosphatase	Endonuclease/exonuclease/phosphatase
PF01432	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_02468: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00245: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides dorei DSM 17855 Gene: BACDOR_01702: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03104: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02082: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides plebeius DSM 17135 Gene: BACPLE_00184: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02143: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides thetaiotaomicron VPI-5482 Gene: BT2834: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides uniformis ATCC 8492 Gene: BACUNI_04002: Peptidase M3A/M3B, thimet/oligopeptidase F	Bacteroides vulgatus ATCC 8482 Gene: BVU_0992: Peptidase M3A/M3B, thimet/oligopeptidase F	Peptidase M3A/M3B, thimet/oligopeptidase F
secDF	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_02467: Preprotein translocase subunits SecD-SecF	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00246: Preprotein translocase subunits SecD-SecF	Bacteroides dorei DSM 17855 Gene: BACDOR_01701: Preprotein translocase subunits SecD-SecF	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03105: Preprotein translocase subunits SecD-SecF	Bacteroides fragilis NCTC 9343 Gene: BF4225: Preprotein translocase subunits SecD-SecF	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02083: Preprotein translocase subunits SecD-SecF	Bacteroides plebeius DSM 17135 Gene: BACPLE_00183: Preprotein translocase subunits SecD-SecF	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02144: Preprotein translocase subunits SecD-SecF	Bacteroides thetaiotaomicron VPI-5482 Gene: BT2835: Preprotein translocase subunits SecD-SecF	Bacteroides uniformis ATCC 8492 Gene: BACUNI_04003: Preprotein translocase subunits SecD-SecF	Bacteroides vulgatus ATCC 8482 Gene: BVU_0991: Preprotein translocase subunits SecD-SecF	Preprotein translocase subunits SecD-SecF
CRON 5.
BACCELL_00794	* Bacteroides cellulosilyticus DSM 14838 Site: position = -135 score = 6.07378 sequence = TTTTATGTTATAAAACATATTT Gene: BACCELL_00794: hypothetical protein	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00747: hypothetical protein	* Bacteroides dorei DSM 17855 Site: position = -33 score = 4.53713 sequence = TTTTAGGTTTAACAAATTAAAA Gene: BACDOR_04003: hypothetical protein	* Bacteroides eggerthii DSM 20697 Site: position = -129 score = 5.51497 sequence = TTTTGTGTTATAAAACATATTC Gene: BACEGG_00156: hypothetical protein	* Bacteroides fragilis NCTC 9343 Site: position = -151 score = 5.95002 sequence = TTTTATGTTGAATAACATATTT Gene: BF3646: hypothetical protein	* Bacteroides ovatus ATCC 8483 Site: position = -135 score = 5.81011 sequence = TTTTATGCTATAAAACATATTC Gene: BACOVA_03166: hypothetical protein	* Bacteroides plebeius DSM 17135 Site: position = -116 score = 5.47314 sequence = TTTTATGTTATCCAACATATTC Gene: BACPLE_00736: hypothetical protein	* Bacteroides stercoris ATCC 43183 Site: position = -132 score = 5.67198 sequence = TTTTGTGTTATAAAACATAATC Gene: BACSTE_03638: hypothetical protein	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -135 score = 5.39099 sequence = TTTTATGCTATAAAACATATCG Gene: BT2178: hypothetical protein	* Bacteroides uniformis ATCC 8492 Site: position = -125 score = 5.68567 sequence = TTTTGTGTTATAAAACATATAC Gene: BACUNI_03316: hypothetical protein	* Bacteroides vulgatus ATCC 8482 Site: position = -33 score = 4.53713 sequence = TTTTAGGTTTAACAAATTAAAA Gene: BVU_2553: hypothetical protein	hypothetical protein
CRON 6.
pflB	* Bacteroides cellulosilyticus DSM 14838 Site: position = -107 score = 6.04252 sequence = TTTTATGTCGTACAACATAAAA Gene: BACCELL_03929: Pyruvate formate-lyase (EC 2.3.1.54)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00555: Pyruvate formate-lyase (EC 2.3.1.54)	Bacteroides dorei DSM 17855 Gene: BACDOR_04432: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides eggerthii DSM 20697 Site: position = -4 score = 6.05942 sequence = TTTTATGTTCTTCAGCATAAAA Gene: BACEGG_01611: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides fragilis NCTC 9343 Site: position = -107 score = 6.28325 sequence = TTTTATGCTATTCAACATAAAA Gene: BF1323: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides ovatus ATCC 8483 Site: position = -113 score = 6.14939 sequence = TTTTATGTTGAAAAGCATAAAA Gene: BACOVA_05597: Pyruvate formate-lyase (EC 2.3.1.54)	Bacteroides plebeius DSM 17135 Gene: BACPLE_01859: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides stercoris ATCC 43183 Site: position = -116 score = 6.05942 sequence = TTTTATGCTCTTCAACATAAAA Gene: BACSTE_00806: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -114 score = 6.14939 sequence = TTTTATGTTGAAAAGCATAAAA Gene: BT4738: Pyruvate formate-lyase (EC 2.3.1.54)	* Bacteroides uniformis ATCC 8492 Site: position = -117 score = 6.22618 sequence = TTTTATGCTGTTCAACATAAAA Gene: BACUNI_04526: Pyruvate formate-lyase (EC 2.3.1.54)	Bacteroides vulgatus ATCC 8482 Gene: BVU_2880: Pyruvate formate-lyase (EC 2.3.1.54)	Pyruvate formate-lyase (EC 2.3.1.54)
pflA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03928: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00554: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides dorei DSM 17855 Gene: BACDOR_04431: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01610: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides fragilis NCTC 9343 Gene: BF1322: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05596: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides plebeius DSM 17135 Gene: BACPLE_01858: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00807: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4737: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_04527: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Bacteroides vulgatus ATCC 8482 Gene: BVU_2879: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
CRON 7.
PF09719	* Bacteroides cellulosilyticus DSM 14838 Site: position = -142 score = 5.58512 sequence = TTTTATGACATATAACATAAAA Site: position = -110 score = 5.76102 sequence = TAATGTGTTATATAACATAAAT Gene: BACCELL_04404: Putative redox-active protein (C_GCAxxG_C_C)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00412: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides dorei DSM 17855 Site: position = -110 score = 4.5762 sequence = AAAAGTGTTGAATAACATAATT Gene: BACDOR_00927: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides eggerthii DSM 20697 Site: position = -109 score = 5.55836 sequence = TAACGTGTTATATAACATAAAA Gene: BACEGG_02494: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides fragilis NCTC 9343 Site: position = -99 score = 5.86502 sequence = TAATCTGTTATATAACATAATT Gene: BF2582: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides ovatus ATCC 8483 Site: position = -107 score = 5.31853 sequence = TAAAGTGTTATATAACATAAAA Gene: BACOVA_02257: Putative redox-active protein (C_GCAxxG_C_C)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02921: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides stercoris ATCC 43183 Site: position = -110 score = 5.40688 sequence = TAACGTGCTATATAACATAAAA Gene: BACSTE_01186: Putative redox-active protein (C_GCAxxG_C_C)	Bacteroides thetaiotaomicron VPI-5482	* Bacteroides uniformis ATCC 8492 Site: position = -105 score = 5.34429 sequence = TAACGTGTTGTATAACATAAAT Gene: BACUNI_02281: Putative redox-active protein (C_GCAxxG_C_C)	* Bacteroides vulgatus ATCC 8482 Site: position = -104 score = 4.5762 sequence = AAAAGTGTTGAATAACATAATT Gene: BVU_3908: Putative redox-active protein (C_GCAxxG_C_C)	Putative redox-active protein (C_GCAxxG_C_C)
CRON 8.
fucR	* Bacteroides cellulosilyticus DSM 14838 Site: position = -124 score = 5.2163 sequence = TTATATGCTGCAAAACATATCC Gene: BACCELL_04988: Transcriptional regulator of fucose utilization, GntR family	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -114 score = 5.14649 sequence = TCTTGTGTTATAAAACATACCA Gene: BACDOR_02265: Transcriptional regulator of fucose utilization, GntR family	Bacteroides eggerthii DSM 20697	* Bacteroides fragilis NCTC 9343 Site: position = -114 score = 5.59933 sequence = TTTGATGTTGTATAACATACCA Gene: BF0210: Transcriptional regulator of fucose utilization, GntR family	* Bacteroides ovatus ATCC 8483 Site: position = -100 score = 5.77773 sequence = TTTTCTGCTATAAAACATATCA Gene: BACOVA_03849: Transcriptional regulator of fucose utilization, GntR family	* Bacteroides plebeius DSM 17135 Site: position = -93 score = 4.58841 sequence = AAATCTGTTCTTAAACATAGCT Gene: BACPLE_02898: Transcriptional regulator of fucose utilization, GntR family	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -100 score = 5.45775 sequence = TTTCCTGCTATAGAACATATTA Gene: BT1272: Transcriptional regulator of fucose utilization, GntR family	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -114 score = 4.98948 sequence = TCTTGTGTTATAAAACATACCT Gene: BVU_1374: Transcriptional regulator of fucose utilization, GntR family	Transcriptional regulator of fucose utilization, GntR family
fucI	2 Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04986: L-fucose isomerase (EC 5.3.1.25) Gene: BACCELL_04985: L-fucose isomerase (EC 5.3.1.25)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03383: L-fucose isomerase (EC 5.3.1.25)	Bacteroides dorei DSM 17855 Gene: BACDOR_02264: L-fucose isomerase (EC 5.3.1.25)	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0211: L-fucose isomerase (EC 5.3.1.25)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03850: L-fucose isomerase (EC 5.3.1.25)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02897: L-fucose isomerase (EC 5.3.1.25)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1273: L-fucose isomerase (EC 5.3.1.25)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1373: L-fucose isomerase (EC 5.3.1.25)	L-fucose isomerase (EC 5.3.1.25)
fucA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04984: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03381: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0213: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03851: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02896: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1274: L-fuculose phosphate aldolase (EC 4.1.2.17)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	L-fuculose phosphate aldolase (EC 4.1.2.17)
fucK	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04983: L-fuculokinase (EC 2.7.1.51)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03380: L-fuculokinase (EC 2.7.1.51)	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0214: L-fuculokinase (EC 2.7.1.51)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03852: L-fuculokinase (EC 2.7.1.51)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02895: L-fuculokinase (EC 2.7.1.51)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1275: L-fuculokinase (EC 2.7.1.51)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	L-fuculokinase (EC 2.7.1.51)
fucU	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04982: Possible alternative L-fucose mutarotase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03853: Possible alternative L-fucose mutarotase	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1276: Possible alternative L-fucose mutarotase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Possible alternative L-fucose mutarotase
fucP	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04981: L-fucose permease	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03379: L-fucose permease	Bacteroides dorei DSM 17855 Gene: BACDOR_02263: L-fucose permease	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0215: L-fucose permease	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03854: L-fucose permease	Bacteroides plebeius DSM 17135 Gene: BACPLE_02894: L-fucose permease	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1277: L-fucose permease	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1372: L-fucose permease	L-fucose permease
fucO	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03382: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0212: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Lactaldehyde reductase (EC 1.1.1.77)
CRON 9.
PF10438	Bacteroides cellulosilyticus DSM 14838	* Bacteroides coprophilus DSM 18228 Site: position = -53 score = 5.45147 sequence = TAATATGTTGGAAAACATATAA Gene: BACCOPRO_03681: Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites	* Bacteroides dorei DSM 17855 Site: position = -58 score = 5.37802 sequence = AGATATGCTGAAAAACATATAA Gene: BACDOR_03939: Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_02836: Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -58 score = 5.37802 sequence = AGATATGCTGAAAAACATATAA Gene: BVU_2487: Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites	Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites
CRON 10.
susC_Rgu-1	* Bacteroides cellulosilyticus DSM 14838 Site: position = -184 score = 5.75749 sequence = TTTTCTGTTATATAACATCATT Gene: BACCELL_03135: TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	* Bacteroides eggerthii DSM 20697 Site: position = -185 score = 5.28078 sequence = ATTTCTGCTTTACAACATACTC Gene: BACEGG_00870: TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4114: TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers
susD_Rgu-1	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03134: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00869: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4113: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
BT4112	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03133: Predicted pectin lyase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00868: Predicted pectin lyase	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4112: Predicted pectin lyase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted pectin lyase
CRON 11.
BT1272	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	* Bacteroides fragilis NCTC 9343 Site: position = -90 score = 5.71151 sequence = TATTATGTTACAAAACATATAC Gene: BF0315: Transcriptional regulator, GntR family	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -77 score = 4.76959 sequence = CTGTATGTTGTAAAACACATAC Gene: BT2096: Transcriptional regulator, GntR family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Transcriptional regulator, GntR family
CRON 12.
xylD	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_00858: Endo-1,4-beta-xylanase D	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_01276: Endo-1,4-beta-xylanase D	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_03732: Endo-1,4-beta-xylanase D	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3675: Endo-1,4-beta-xylanase D	* Bacteroides uniformis ATCC 8492 Site: position = -91 score = 5.53279 sequence = GTATATGTTACACAACATATAC Gene: BACUNI_03327: Endo-1,4-beta-xylanase D	Bacteroides vulgatus ATCC 8482 Gene: BVU_0497: Endo-1,4-beta-xylanase D	Endo-1,4-beta-xylanase D
GH97	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_00859: Alpha-glucosidase, glycoside hydrolase family 97	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_01718: Alpha-glucosidase, glycoside hydrolase family 97	* Bacteroides eggerthii DSM 20697 Site: position = -92 score = 5.17313 sequence = GTATATGTTACACAACATGTAC Gene: BACEGG_00165: Alpha-glucosidase, glycoside hydrolase family 97	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03484: Alpha-glucosidase, glycoside hydrolase family 97	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3661: Alpha-glucosidase, glycoside hydrolase family 97	Bacteroides uniformis ATCC 8492 Gene: BACUNI_03328: Alpha-glucosidase, glycoside hydrolase family 97	Bacteroides vulgatus ATCC 8482 Gene: BVU_1004: Alpha-glucosidase, glycoside hydrolase family 97	Alpha-glucosidase, glycoside hydrolase family 97
CRON 13.
susC_Crp-4	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03230: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides eggerthii DSM 20697	* Bacteroides fragilis NCTC 9343 Site: position = -162 score = 5.39054 sequence = TTCTATGTTATTAGACATAAAA Gene: BF0594: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	* Bacteroides stercoris ATCC 43183 Site: position = -162 score = 5.28741 sequence = AAACATGCTATTCAGCATAAAA Gene: BACSTE_00464: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of oligosaccharides
susD_Crp-4	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03231: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0595: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00462: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for oligosaccharides
CRON 14.
susC_Crp-3	* Bacteroides cellulosilyticus DSM 14838 Site: position = -225 score = 5.37678 sequence = TTCTATGTTCTATAACATGCAA Gene: BACCELL_03480: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	* Bacteroides uniformis ATCC 8492 Site: position = -225 score = 4.9997 sequence = TTTTGTGTTATATAACATGTTG Gene: BACUNI_01489: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of oligosaccharides
susD_Crp-3	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03481: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01488: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for oligosaccharides
BACCELL_03482	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03482: Galactose-binding domain-like	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01487: Galactose-binding domain-like	Bacteroides vulgatus ATCC 8482	Galactose-binding domain-like
PF00722	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03483: Glycoside hydrolase, family 16	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_03793: Glycoside hydrolase, family 16	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	* Bacteroides uniformis ATCC 8492 Site: position = -26 score = 5.05324 sequence = ACTTATGTTGTAAAATATATAT Gene: BACUNI_01486: Glycoside hydrolase, family 16	Bacteroides vulgatus ATCC 8482	Glycoside hydrolase, family 16
PF00933	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03484: Glycoside hydrolase, family 3	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_03792: Glycoside hydrolase, family 3	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01484: Glycoside hydrolase, family 3	Bacteroides vulgatus ATCC 8482	Glycoside hydrolase, family 3
PF02836	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01485: Glycoside hydrolase, family 2	Bacteroides vulgatus ATCC 8482	Glycoside hydrolase, family 2
CRON 15.
uxuR	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -162 score = 5.26252 sequence = TCTTATGTTTAACAACATGTAT Gene: BACOVA_00860: Predicted transcriptional regulator for glucuronate catabolism, LacI family	Bacteroides plebeius DSM 17135 Gene: BACPLE_03706: Predicted transcriptional regulator for glucuronate catabolism, LacI family	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -207 score = 5.11416 sequence = TCTTATGTTTAACAACATACGT Gene: BT1434: Predicted transcriptional regulator for glucuronate catabolism, LacI family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted transcriptional regulator for glucuronate catabolism, LacI family
uxuB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01659: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02114: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03381: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides fragilis NCTC 9343 Gene: BF0143: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_00859: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03707: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02444: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1433: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01039: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides vulgatus ATCC 8482 Gene: BVU_1261: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
uxuA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01660: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02115: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03380: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides fragilis NCTC 9343 Gene: BF0142: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_00858: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03708: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02442: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1432: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01040: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides vulgatus ATCC 8482 Gene: BVU_1262: Mannonate dehydratase (EC 4.2.1.8)	Mannonate dehydratase (EC 4.2.1.8)
CRON 16.
susC_Crp-2	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -338 score = 5.12548 sequence = AGATATGTTCAACAACATACTA Gene: BACDOR_00155: putative outer membrane protein, probably involved in nutrient binding	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -340 score = 4.86447 sequence = AGATATGTTCAACAACATAGCA Gene: BVU_0299: putative outer membrane protein, probably involved in nutrient binding	putative outer membrane protein, probably involved in nutrient binding
susD_Crp-2	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00154: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0300: Outer membrane polysaccharide binding protein for oligosaccharides	Outer membrane polysaccharide binding protein for oligosaccharides
CRON 17.
sbp_Crp-1	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -168 score = 5.69902 sequence = TTATATGTTATAGAATATAAAA Gene: BT4080: Six-beta-propeller protein, cell surface exposed, putatively involved in polysaccharides binding	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Six-beta-propeller protein, cell surface exposed, putatively involved in polysaccharides binding
susC_Crp-1	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4081: TonB-dependent outer membrane transporter of oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of oligosaccharides
susD_Crp-1	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4082: Outer membrane polysaccharide binding protein for oligosaccharides	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for oligosaccharides
BT4083	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4083: hypothetical protein	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	hypothetical protein
BT4084	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4084: Glycosyl hydrolase family 43, five-bladed beta-propellor domain	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Glycosyl hydrolase family 43, five-bladed beta-propellor domain
CRON 18.
crp	* Bacteroides cellulosilyticus DSM 14838 Site: position = -33 score = 4.67415 sequence = ATTTGTGCTGTATAACACAGTT Gene: BACCELL_03476: transcriptional regulator, Crp/Fnr family	* Bacteroides coprophilus DSM 18228 Site: position = -33 score = 4.62586 sequence = TTTTGTGCTTAATAACACGATT Gene: BACCOPRO_01276: transcriptional regulator, Crp/Fnr family	* Bacteroides dorei DSM 17855 Site: position = -35 score = 4.14773 sequence = ATTTGTGCTCTATAACACGGTT Gene: BACDOR_01607: transcriptional regulator, Crp/Fnr family	* Bacteroides eggerthii DSM 20697 Site: position = -33 score = 4.61709 sequence = ATTTGTGCTGTACAACACAGTT Gene: BACEGG_01340: transcriptional regulator, Crp/Fnr family	* Bacteroides fragilis NCTC 9343 Site: position = -33 score = 4.59737 sequence = ATTTGTGCTTTATAACACAGTT Gene: BF0954: transcriptional regulator, Crp/Fnr family	* Bacteroides ovatus ATCC 8483 Site: position = -33 score = 4.83116 sequence = TTTTGTGCTGTATAACACAGTT Gene: BACOVA_05152: transcriptional regulator, Crp/Fnr family	* Bacteroides plebeius DSM 17135 Site: position = -16 score = 4.08212 sequence = CTTTGTGCTTAATAACATGGTT Gene: BACPLE_02167: transcriptional regulator, Crp/Fnr family	* Bacteroides stercoris ATCC 43183 Site: position = -33 score = 4.61709 sequence = ATTTGTGCTGTACAACACAGTT Gene: BACSTE_03515: transcriptional regulator, Crp/Fnr family	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -33 score = 4.83116 sequence = TTTTGTGCTGTATAACACAGTT Gene: BT4338: transcriptional regulator, Crp/Fnr family	* Bacteroides uniformis ATCC 8492 Site: position = -33 score = 4.67415 sequence = ATTTGTGCTGTATAACACAGTT Gene: BACUNI_04721: transcriptional regulator, Crp/Fnr family	* Bacteroides vulgatus ATCC 8482 Site: position = -35 score = 4.14773 sequence = ATTTGTGCTCTATAACACGGTT Gene: BVU_3580: transcriptional regulator, Crp/Fnr family	transcriptional regulator, Crp/Fnr family
hex	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03475: Beta-hexosaminidase (EC 3.2.1.52)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03491: Beta-hexosaminidase (EC 3.2.1.52)	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0953: Beta-hexosaminidase (EC 3.2.1.52)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05141: Beta-hexosaminidase (EC 3.2.1.52)	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4337: Beta-hexosaminidase (EC 3.2.1.52)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_2209: Beta-hexosaminidase (EC 3.2.1.52)	Beta-hexosaminidase (EC 3.2.1.52)
CRON 19.
COG3533	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	* Bacteroides fragilis NCTC 9343 Site: position = -143 score = 5.71151 sequence = GTATATGTTTTGTAACATAATA Gene: BF0316: Six-hairpin glycosidase-like, COG3533 family	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -111 score = 4.76959 sequence = GTATGTGTTTTACAACATACAG Gene: BT2097: Six-hairpin glycosidase-like, COG3533 family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Six-hairpin glycosidase-like, COG3533 family
BF0317	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0317: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Alpha-N-arabinofuranosidase (EC 3.2.1.55)
BF0318	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF0318: Alpha-rhamnosidase	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Alpha-rhamnosidase
CRON 20.
araM	* Bacteroides cellulosilyticus DSM 14838 Site: position = -105 score = 6.01606 sequence = TTTTATGTTACATAACATATAC Gene: BACCELL_05604: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -104 score = 5.58788 sequence = TTTTATGTTGCACAACATACTC Gene: BACDOR_03634: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	* Bacteroides eggerthii DSM 20697 Site: position = -105 score = 6.1419 sequence = TTTTATGTTACATAACATACAA Gene: BACEGG_01536: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -105 score = 5.86264 sequence = ATTTATGCTGCACAACATATAA Gene: BACOVA_01715: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	* Bacteroides plebeius DSM 17135 Site: position = -89 score = 4.91226 sequence = TTCTATGTTGAAAAACATCTGA Gene: BACPLE_02214: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -105 score = 6.17112 sequence = TTTTATGTTGCACAACATATAA Gene: BT0356: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	* Bacteroides uniformis ATCC 8492 Site: position = -48 score = 5.70651 sequence = ACTTATGTTGCATAACATATAA Gene: BACUNI_01357: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	* Bacteroides vulgatus ATCC 8482 Site: position = -104 score = 5.58788 sequence = TTTTATGTTGCACAACATACTC Gene: BVU_2324: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase	Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase
araP	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05605: Predicted sodium-dependent arabinose transporter	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03633: Predicted sodium-dependent arabinose transporter	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01535: Predicted sodium-dependent arabinose transporter	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_01714: Predicted sodium-dependent arabinose transporter	Bacteroides plebeius DSM 17135 Gene: BACPLE_02216: Predicted sodium-dependent arabinose transporter	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0355: Predicted sodium-dependent arabinose transporter	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01358: Predicted sodium-dependent arabinose transporter	Bacteroides vulgatus ATCC 8482 Gene: BVU_2323: Predicted sodium-dependent arabinose transporter	Predicted sodium-dependent arabinose transporter
araR	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05606: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03632: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01534: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_01713: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides plebeius DSM 17135 Gene: BACPLE_02213: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0354: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01359: Predicted transcriptional regulator for arabinose utilization, NrtR family	Bacteroides vulgatus ATCC 8482 Gene: BVU_2322: Predicted transcriptional regulator for arabinose utilization, NrtR family	Predicted transcriptional regulator for arabinose utilization, NrtR family
araD	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05607: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03631: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01533: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_01712: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02212: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0353: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01360: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Bacteroides vulgatus ATCC 8482 Gene: BVU_2321: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
BT0352	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0352: hypothetical protein	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	hypothetical protein
araA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05608: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03630: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01532: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_01711: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02211: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0351: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01361: L-arabinose isomerase (EC 5.3.1.4)	Bacteroides vulgatus ATCC 8482 Gene: BVU_2320: L-arabinose isomerase (EC 5.3.1.4)	L-arabinose isomerase (EC 5.3.1.4)
araB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05609: Ribulokinase (EC 2.7.1.16)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_03629: Ribulokinase (EC 2.7.1.16)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01531: Ribulokinase (EC 2.7.1.16)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_01710: Ribulokinase (EC 2.7.1.16)	Bacteroides plebeius DSM 17135 Gene: BACPLE_02210: Ribulokinase (EC 2.7.1.16)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0350: Ribulokinase (EC 2.7.1.16)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01362: Ribulokinase (EC 2.7.1.16)	Bacteroides vulgatus ATCC 8482 Gene: BVU_2319: Ribulokinase (EC 2.7.1.16)	Ribulokinase (EC 2.7.1.16)

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