Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Bacteroides cellulosilyticus DSM 14838

Properties
Regulator type: Transcription factor
TF locus tag: BACCELL_03476
Regulator family: CRP
Regulation mode: activator
Biological process:
Effector:
Regulog: Crp - Bacteroidaceae
Statistics of regulated genes:
- Genes 31
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 113 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -107
Score: 6
Sequence: TTTTATGTCGTACAACATAAAA
Locus tag: BACCELL_03929
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: BACCELL_03928
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
BACCELL_03929
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
BACCELL_03928
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -225
Score: 5.4
Sequence: TTCTATGTTCTATAACATGCAA
Locus tag: BACCELL_03480
Name: susC_Crp-3
Funciton: TonB-dependent outer membrane transporter of oligosaccharides
Locus tag: BACCELL_03481
Name: susD_Crp-3
Funciton: Outer membrane polysaccharide binding protein for oligosaccharides
Locus tag: BACCELL_03482
Name: BACCELL_03482
Funciton: Galactose-binding domain-like
Locus tag: BACCELL_03483
Name: PF00722
Funciton: Glycoside hydrolase, family 16
Locus tag: BACCELL_03484
Name: PF00933
Funciton: Glycoside hydrolase, family 3
BACCELL_03480
susC_Crp-3
TonB-dependent outer membrane transporter of oligosaccharides
BACCELL_03481
susD_Crp-3
Outer membrane polysaccharide binding protein for oligosaccharides
BACCELL_03482
BACCELL_03482
Galactose-binding domain-like
BACCELL_03483
PF00722
Glycoside hydrolase, family 16
BACCELL_03484
PF00933
Glycoside hydrolase, family 3
Position: -33
Score: 4.7
Sequence: ATTTGTGCTGTATAACACAGTT
Locus tag: BACCELL_03476
Name: crp
Funciton: transcriptional regulator, Crp/Fnr family
Locus tag: BACCELL_03475
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
BACCELL_03476
crp
transcriptional regulator, Crp/Fnr family
BACCELL_03475
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -124
Score: 5.2
Sequence: TTATATGCTGCAAAACATATCC
Locus tag: BACCELL_04988
Name: fucR
Funciton: Transcriptional regulator of fucose utilization, GntR family
BACCELL_04988
fucR
Transcriptional regulator of fucose utilization, GntR family
Position: -163
Score: 5.5
Sequence: TTTCATGTTATATAACATGTTT
Locus tag: BACCELL_04825
Name: serB
Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
BACCELL_04825
serB
Phosphoserine phosphatase (EC 3.1.3.3)
Position: -184
Score: 5.8
Sequence: TTTTCTGTTATATAACATCATT
Locus tag: BACCELL_03135
Name: susC_Rgu-1
Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers
Locus tag: BACCELL_03134
Name: susD_Rgu-1
Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
Locus tag: BACCELL_03133
Name: BT4112
Funciton: Predicted pectin lyase
BACCELL_03135
susC_Rgu-1
TonB-dependent outer membrane transporter of rhamnogalacturonan oligomers
BACCELL_03134
susD_Rgu-1
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
BACCELL_03133
BT4112
Predicted pectin lyase
Position: -135
Score: 6.1
Sequence: TTTTATGTTATAAAACATATTT
Locus tag: BACCELL_00794
Name: null
Funciton: hypothetical protein
BACCELL_00794
hypothetical protein
Position: -105
Score: 6
Sequence: TTTTATGTTACATAACATATAC
Locus tag: BACCELL_05604
Name: araM
Funciton: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase
Locus tag: BACCELL_05605
Name: araP
Funciton: Predicted sodium-dependent arabinose transporter
Locus tag: BACCELL_05606
Name: araR
Funciton: Predicted transcriptional regulator for arabinose utilization, NrtR family
Locus tag: BACCELL_05607
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: BACCELL_05608
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: BACCELL_05609
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
BACCELL_05604
araM
Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase
BACCELL_05605
araP
Predicted sodium-dependent arabinose transporter
BACCELL_05606
araR
Predicted transcriptional regulator for arabinose utilization, NrtR family
BACCELL_05607
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
BACCELL_05608
araA
L-arabinose isomerase (EC 5.3.1.4)
BACCELL_05609
araB
Ribulokinase (EC 2.7.1.16)
Position: -83
Score: 4.9
Sequence: AATAGTGCTTTATAACATAATA
Locus tag: BACCELL_04758
Name: xylR
Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACCELL_04759
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACCELL_04760
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACCELL_04761
Name: xylE
Funciton: D-xylose proton-symporter XylE
BACCELL_04758
xylR
Predicted regulator of xylose utilization, NrtR family
BACCELL_04759
xylB
Xylulose kinase (EC 2.7.1.17)
BACCELL_04760
xylA
Xylose isomerase (EC 5.3.1.5)
BACCELL_04761
xylE
D-xylose proton-symporter XylE
Position: -196
Score: 5
Sequence: TAATATGTTACACAAAAGATAT
Position: -62
Score: 5.8
Sequence: TTTTCTGTTATAGAACAGAATT
Locus tag: BACCELL_02471
Name: PF01694
Funciton: Peptidase S54, rhomboid domain
Locus tag: BACCELL_02470
Name: PF01694
Funciton: Peptidase S54, rhomboid domain
Locus tag: BACCELL_02469
Name: PF03372
Funciton: Endonuclease/exonuclease/phosphatase
Locus tag: BACCELL_02468
Name: PF01432
Funciton: Peptidase M3A/M3B, thimet/oligopeptidase F
Locus tag: BACCELL_02467
Name: secDF
Funciton: Preprotein translocase subunits SecD-SecF
BACCELL_02471
PF01694
Peptidase S54, rhomboid domain
BACCELL_02470
PF01694
Peptidase S54, rhomboid domain
BACCELL_02469
PF03372
Endonuclease/exonuclease/phosphatase
BACCELL_02468
PF01432
Peptidase M3A/M3B, thimet/oligopeptidase F
BACCELL_02467
secDF
Preprotein translocase subunits SecD-SecF
Position: -142
Score: 5.6
Sequence: TTTTATGACATATAACATAAAA
Position: -110
Score: 5.8
Sequence: TAATGTGTTATATAACATAAAT
Locus tag: BACCELL_04404
Name: PF09719
Funciton: Putative redox-active protein (C_GCAxxG_C_C)
BACCELL_04404
PF09719
Putative redox-active protein (C_GCAxxG_C_C)
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