Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Bacteroides dorei DSM 17855

Properties
Regulator type: Transcription factor
TF locus tag: BACDOR_01607
Regulator family: CRP
Regulation mode: activator
Biological process:
Effector:
Regulog: Crp - Bacteroidaceae
Statistics of regulated genes:
- Genes 24
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 113 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -35
Score: 4.1
Sequence: ATTTGTGCTCTATAACACGGTT
Locus tag: BACDOR_01607
Name: crp
Funciton: transcriptional regulator, Crp/Fnr family
BACDOR_01607
crp
transcriptional regulator, Crp/Fnr family
Position: -338
Score: 5.1
Sequence: AGATATGTTCAACAACATACTA
Locus tag: BACDOR_00155
Name: susC_Crp-2
Funciton: putative outer membrane protein, probably involved in nutrient binding
Locus tag: BACDOR_00154
Name: susD_Crp-2
Funciton: Outer membrane polysaccharide binding protein for oligosaccharides
BACDOR_00155
susC_Crp-2
putative outer membrane protein, probably involved in nutrient binding
BACDOR_00154
susD_Crp-2
Outer membrane polysaccharide binding protein for oligosaccharides
Position: -110
Score: 4.6
Sequence: AAAAGTGTTGAATAACATAATT
Locus tag: BACDOR_00927
Name: PF09719
Funciton: Putative redox-active protein (C_GCAxxG_C_C)
BACDOR_00927
PF09719
Putative redox-active protein (C_GCAxxG_C_C)
Position: -58
Score: 5.4
Sequence: AGATATGCTGAAAAACATATAA
Locus tag: BACDOR_03939
Name: PF10438
Funciton: Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites
BACDOR_03939
PF10438
Cyclo-malto-dextrinase C-terminal domain, involved in stabilisation of acitve sites
Position: -71
Score: 6.2
Sequence: TTTTCTGTTATATAACAGAATA
Locus tag: BACDOR_01705
Name: PF01694
Funciton: Peptidase S54, rhomboid domain
Locus tag: BACDOR_01704
Name: PF01694
Funciton: Peptidase S54, rhomboid domain
Locus tag: BACDOR_01703
Name: PF03372
Funciton: Endonuclease/exonuclease/phosphatase
Locus tag: BACDOR_01702
Name: PF01432
Funciton: Peptidase M3A/M3B, thimet/oligopeptidase F
Locus tag: BACDOR_01701
Name: secDF
Funciton: Preprotein translocase subunits SecD-SecF
BACDOR_01705
PF01694
Peptidase S54, rhomboid domain
BACDOR_01704
PF01694
Peptidase S54, rhomboid domain
BACDOR_01703
PF03372
Endonuclease/exonuclease/phosphatase
BACDOR_01702
PF01432
Peptidase M3A/M3B, thimet/oligopeptidase F
BACDOR_01701
secDF
Preprotein translocase subunits SecD-SecF
Position: -33
Score: 4.5
Sequence: TTTTAGGTTTAACAAATTAAAA
Locus tag: BACDOR_04003
Name: null
Funciton: hypothetical protein
BACDOR_04003
hypothetical protein
Position: -34
Score: 4.8
Sequence: AATAGTGTTTTAGAACATAATA
Locus tag: BACDOR_00865
Name: xylR
Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACDOR_00866
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACDOR_00867
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
BACDOR_00865
xylR
Predicted regulator of xylose utilization, NrtR family
BACDOR_00866
xylB
Xylulose kinase (EC 2.7.1.17)
BACDOR_00867
xylA
Xylose isomerase (EC 5.3.1.5)
Position: -114
Score: 5.1
Sequence: TCTTGTGTTATAAAACATACCA
Locus tag: BACDOR_02265
Name: fucR
Funciton: Transcriptional regulator of fucose utilization, GntR family
Locus tag: BACDOR_02264
Name: fucI
Funciton: L-fucose isomerase (EC 5.3.1.25)
Locus tag: BACDOR_02263
Name: fucP
Funciton: L-fucose permease
BACDOR_02265
fucR
Transcriptional regulator of fucose utilization, GntR family
BACDOR_02264
fucI
L-fucose isomerase (EC 5.3.1.25)
BACDOR_02263
fucP
L-fucose permease
Position: -116
Score: 6.1
Sequence: AAATATGTTATATAGCATAAAA
Locus tag: BACDOR_02848
Name: serB
Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
BACDOR_02848
serB
Phosphoserine phosphatase (EC 3.1.3.3)
Position: -104
Score: 5.6
Sequence: TTTTATGTTGCACAACATACTC
Locus tag: BACDOR_03634
Name: araM
Funciton: Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase
Locus tag: BACDOR_03633
Name: araP
Funciton: Predicted sodium-dependent arabinose transporter
Locus tag: BACDOR_03632
Name: araR
Funciton: Predicted transcriptional regulator for arabinose utilization, NrtR family
Locus tag: BACDOR_03631
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: BACDOR_03630
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: BACDOR_03629
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
BACDOR_03634
araM
Aldose 1-epimerase (EC 5.1.3.3), L-arabinose mutarotase
BACDOR_03633
araP
Predicted sodium-dependent arabinose transporter
BACDOR_03632
araR
Predicted transcriptional regulator for arabinose utilization, NrtR family
BACDOR_03631
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
BACDOR_03630
araA
L-arabinose isomerase (EC 5.3.1.4)
BACDOR_03629
araB
Ribulokinase (EC 2.7.1.16)
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