Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HcpR - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838 2 2
Bacteroides coprophilus DSM 18228 3 3
Bacteroides dorei DSM 17855 3 2
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343 2 2
Bacteroides ovatus ATCC 8483 1 1
Bacteroides plebeius DSM 17135 3 3
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482 1 1
Bacteroides uniformis ATCC 8492 2 2
Bacteroides vulgatus ATCC 8482 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hcpR
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -43
score = 5.69404
sequence = TTGTCACGTATGTTACAC

Gene: BACCELL_02846: Hcp transcriptional regulator HcpR, Crp family
*
Bacteroides coprophilus DSM 18228

Site:
position = -45
score = 5.3499
sequence = CTGTAACTTATGTGACAC

Gene: BACCOPRO_00665: Hcp transcriptional regulator HcpR, Crp family
*
Bacteroides dorei DSM 17855

Site:
position = -49
score = 6.09395
sequence = TTGTACCATATGTTACAG

Gene: BACDOR_04542: Hcp transcriptional regulator HcpR, Crp family
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343

Gene: BF2205: Hcp transcriptional regulator HcpR, Crp family
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_02391: Hcp transcriptional regulator HcpR, Crp family
*
Bacteroides plebeius DSM 17135

Site:
position = -45
score = 5.46793
sequence = CTGTCACCTATGTGACAC

Gene: BACPLE_00934: Hcp transcriptional regulator HcpR, Crp family
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT0688: Hcp transcriptional regulator HcpR, Crp family
*
Bacteroides uniformis ATCC 8492

Site:
position = -44
score = 5.56367
sequence = CTGTCACGAATGTTACAT

Gene: BACUNI_04426: Hcp transcriptional regulator HcpR, Crp family
*
Bacteroides vulgatus ATCC 8482

Site:
position = -49
score = 6.09395
sequence = TTGTACCATATGTTACAG

Gene: BVU_2982: Hcp transcriptional regulator HcpR, Crp family
Hcp transcriptional regulator HcpR, Crp family
 
CRON 2.
hcp
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -292
score = 5.69404
sequence = GTGTAACATACGTGACAA

Gene: BACCELL_02847: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides coprophilus DSM 18228

Site:
position = -87
score = 5.3499
sequence = GTGTCACATAAGTTACAG

Gene: BACCOPRO_00666: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides dorei DSM 17855

Site:
position = -35
score = 6.09395
sequence = CTGTAACATATGGTACAA

Gene: BACDOR_04541: Hydroxylamine reductase (EC 1.7.-.-)
 
Bacteroides eggerthii DSM 20697
*
Bacteroides fragilis NCTC 9343

Site:
position = -88
score = 5.97734
sequence = TTGTAACATTGGTTACAG

Gene: BF2204: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides ovatus ATCC 8483

Site:
position = -91
score = 5.97734
sequence = TTGTAACATTGGTTACAG

Gene: BACOVA_02390: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides plebeius DSM 17135

Site:
position = -87
score = 5.46793
sequence = GTGTCACATAGGTGACAG

Gene: BACPLE_00933: Hydroxylamine reductase (EC 1.7.-.-)
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -91
score = 5.85483
sequence = ATGTAACATTGGTTACAA

Gene: BT_0687: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides uniformis ATCC 8492

Site:
position = -145
score = 5.56367
sequence = ATGTAACATTCGTGACAG

Gene: BACUNI_04425: Hydroxylamine reductase (EC 1.7.-.-)
*
Bacteroides vulgatus ATCC 8482

Site:
position = -71
score = 6.09395
sequence = CTGTAACATATGGTACAA

Gene: BVU_2981: Hydroxylamine reductase (EC 1.7.-.-)
Hydroxylamine reductase (EC 1.7.-.-)
dnrN
 
Bacteroides cellulosilyticus DSM 14838
*
Bacteroides coprophilus DSM 18228

Site:
position = -72
score = 5.81949
sequence = ATGTAACCTATGTGACAA

Gene: BACCOPRO_02571: Nitric oxide-dependent regulator DnrN or NorA
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04540: Nitric oxide-dependent regulator DnrN or NorA
 
Bacteroides eggerthii DSM 20697
*
Bacteroides fragilis NCTC 9343

Site:
position = -64
score = 5.97734
sequence = CTGTAACATTGGTTACAA

Gene: BF3316: Nitric oxide-dependent regulator DnrN or NorA
 
Bacteroides ovatus ATCC 8483
*
Bacteroides plebeius DSM 17135

Site:
position = -74
score = 5.46722
sequence = GTGTCACGTATGTGACAA

Gene: BACPLE_01452: Nitric oxide-dependent regulator DnrN or NorA
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00334: Nitric oxide-dependent regulator DnrN or NorA
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_2980: Nitric oxide-dependent regulator DnrN or NorA
Nitric oxide-dependent regulator DnrN or NorA
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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