Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HTCS_Rgu-1 regulog to Bacteroides dorei DSM 17855

Reference regulog properties
Source regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides dorei DSM 17855
Orthologous TF(s) BACDOR_03348, BACDOR_03254
Regulated genes 4
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacteroides dorei DSM 17855
Locus tag Position Score Sequence
Position: -237
Score: 9.5
Sequence: CAAAAAATCCAC-(9)-CAAATAGTGCAC
Locus tag: BACDOR_03070
BACDOR_03070 -237 9.5 CAAAAAATCCAC-(9)-CAAATAGTGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX1
Ortholog function: Polygalacturonase (EC 3.2.1.15 )
Bacteroides dorei DSM 17855 BACDOR_03070 -237 9.5 CAAAAAATCCAC-(9)-CAAATAGTGCAC
Bacteroides vulgatus ATCC 8482 BVU_1985 -237 9.5 CAAAAAATCCAC-(9)-CAAATAGTGCAC
Position: -106
Score: 8.9
Sequence: TAAAATATACGA-(9)-CAAATATTACAA
Locus tag: BACDOR_03257
BACDOR_03257 -106 8.9 TAAAATATACGA-(9)-CAAATATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: plyC4
Ortholog function: Pectate lyase C
Bacteroides dorei DSM 17855 BACDOR_03257 -106 8.9 TAAAATATACGA-(9)-CAAATATTACAA
Bacteroides vulgatus ATCC 8482 BVU_1813 -106 8.9 TAAAATATACGA-(9)-CAAATATTACAA
Position: -124
Score: 9
Sequence: TAATAAATCCAC-(9)-TAAAAACTACAC
Locus tag: BACDOR_03276
BACDOR_03276 -124 9 TAATAAATCCAC-(9)-TAAAAACTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Rgu-1
Ortholog function: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Bacteroides dorei DSM 17855 BACDOR_03276 -124 9 TAATAAATCCAC-(9)-TAAAAACTACAC
Bacteroides vulgatus ATCC 8482 BVU_1799 -123 9 TAATAAATCCAC-(9)-TAAAAACTACAC
Position: -105
Score: 9.4
Sequence: CAAATAATACAC-(9)-TGAAAAGTGCAC
Locus tag: BACDOR_03278
BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Bacteroides dorei DSM 17855 BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00863 -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC
Bacteroides ovatus ATCC 8483 BACOVA_04900 -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA
Bacteroides plebeius DSM 17135 BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Bacteroides stercoris ATCC 43183 BACSTE_03304 -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Bacteroides vulgatus ATCC 8482 BVU_1797 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
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