Propagation of KdgR regulog to Bacteroides fragilis YCH46
| Source regulog: | KdgR - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Bacteroidetes |
| Propagated regulon: | |
| Target genome | Bacteroides fragilis YCH46 |
| Orthologous TF(s) | BF2701 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -61
Score: 4.1 Sequence: GTCGTGTGCGTAAACGGA
Locus tag: BF0071
|
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| BF0071 | -61 | 4.1 | GTCGTGTGCGTAAACGGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI1 | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_02166 | -64 | 4.8 | ATCGTGTACGTAAACGAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_03270 | -64 | 4.4 | ATCGTGTACGTAAACGAC |
| Bacteroides fragilis NCTC 9343 | BF0082 | -61 | 4.1 | GTCGTGTGCGTAAACGGA |
| Bacteroides ovatus ATCC 8483 | BACOVA_00140 | -66 | 4.8 | ATCGTGTACGTAAACGAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_02324 | -65 | 4.4 | ATCGTGTACGTAAACGAC |
| Bacteroides thetaiotaomicron VPI-5482 | BT3231 | -66 | 4.8 | ATCGTGTACGTAAACGAT |
| Bacteroides uniformis ATCC 8492 | BACUNI_04204 | -64 | 4.8 | ATCGTGTACGCAAACGAT |
|
Position: -129
Score: 4.5 Sequence: GTCGTGTGCGAAAACGAT
Position: -107
Score: 4.5 Sequence: ATTGTGCTCGATAACGAA
Locus tag: BF0885
|
||||
| BF0885 | -129 | 4.5 | GTCGTGTGCGAAAACGAT | |
| -107 | 4.5 | ATTGTGCTCGATAACGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hexT | ||||
| Ortholog function: Hexuronate transporter | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03118 | -170 | 4.6 | TTCGTGTGCGAGAACGAG |
| -154 | 4.7 | AGTGTTTTCGTGCACGAT | ||
| Bacteroides dorei DSM 17855 | BACDOR_03281 | -25 | 4.5 | TTCGTGTGCGAAAACGGT |
| -3 | 4.5 | TTTGTGCACGATAACGAT | ||
| Bacteroides eggerthii DSM 20697 | BACEGG_00860 | -182 | 4.9 | TTCGTGTACGAAAACGAA |
| -160 | 4.1 | TTTGTGCACGATAACGAC | ||
| Bacteroides fragilis NCTC 9343 | BF0809 | -198 | 4.5 | GTCGTGTGCGAAAACGAT |
| -176 | 4.6 | ATTGTGTTCGATAACGAA | ||
| Bacteroides ovatus ATCC 8483 | BACOVA_04896 | -193 | 4.5 | TTCGTGCACGGAAACGAC |
| -171 | 4.3 | TTTGTGCACGCAAACGTC | ||
| Bacteroides plebeius DSM 17135 | BACPLE_00504 | -154 | 4.6 | TCCGTGTGCGTAAACGAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_03308 | -182 | 4.9 | TTCGTGTACGAAAACGAA |
| -160 | 4.1 | TTTGTGCACGATAACGAC | ||
| Bacteroides thetaiotaomicron VPI-5482 | BT4105 | -194 | 4.5 | TTCGTGCACGGAAACGAC |
| -172 | 4.2 | TTTGTGCACGTAAACGTC | ||
| Bacteroides uniformis ATCC 8492 | BACUNI_03603 | -183 | 4.6 | TTCGTGTACGAAAACGAG |
| -161 | 4.1 | TTTGTGCACGATAACGAC | ||
| Bacteroides vulgatus ATCC 8482 | BVU_1794 | -181 | 4.5 | TTCGTGTGCGAAAACGGT |
| -159 | 4.5 | TTTGTGCACGATAACGAT | ||
|
Position: -228
Score: 5.7 Sequence: TTTGTGCCCGGACACACT
Position: -146
Score: 5.5 Sequence: TTTGTGTCCGCACACGGA
Locus tag: BF2700
|
||||
| BF2700 | -228 | 5.7 | TTTGTGCCCGGACACACT | |
| -146 | 5.5 | TTTGTGTCCGCACACGGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Bacteroides dorei DSM 17855 | BACDOR_02921 | -228 | 5.5 | ATTGTGCTCGTACACACT |
| -145 | 5.4 | TTTGTGCACGCACACGGA | ||
| Bacteroides eggerthii DSM 20697 | BACEGG_01788 | -227 | 6 | TTTGTGTTCGTACACAAT |
| -145 | 5.9 | TTTGTGCCCGCACACGAA | ||
| Bacteroides fragilis NCTC 9343 | BF2719 | -228 | 5.7 | TTTGTGCCCGGACACACT |
| -146 | 5.5 | TTTGTGTCCGCACACGGA | ||
| Bacteroides ovatus ATCC 8483 | BACOVA_03830 | -228 | 6 | TTTGTGCTCGCACACAAT |
| -146 | 5.9 | TTTGTGCCCGCACACGAA | ||
| Bacteroides plebeius DSM 17135 | BACPLE_00831 | -112 | 6.1 | TTTGTGTGCGTACACAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_00505 | -228 | 5.9 | TTTGTGCCCGTGCACAAT |
| -146 | 5.9 | TTTGTGCCCGCACACGAA | ||
| Bacteroides thetaiotaomicron VPI-5482 | BT0488 | -228 | 5.6 | TATGTGCTCGCACACAAT |
| -146 | 5.9 | TTTGTGCCCGCACACGAA | ||
| Bacteroides uniformis ATCC 8492 | BACUNI_01828 | -231 | 5.6 | CTTGTGCTCGCACACAAT |
| -149 | 5.8 | TTTGTGCCCGTACACGAA | ||
| Bacteroides vulgatus ATCC 8482 | BVU_3055 | -228 | 5.5 | ATTGTGCTCGTGCACACT |
| -145 | 5.4 | TTTGTGCACGCACACGGA | ||
|
Position: -125
Score: 5.5 Sequence: TCCGTGTGCGGACACAAA
Position: -43
Score: 5.7 Sequence: AGTGTGTCCGGGCACAAA
Locus tag: BF2701
|
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| BF2701 | -125 | 5.5 | TCCGTGTGCGGACACAAA | |
| -43 | 5.7 | AGTGTGTCCGGGCACAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgR | ||||
| Ortholog function: Predicted transcriptional regulator for altronate catabolism, LacI family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04099 | -154 | 5.6 | ATTGTGTGCGGACACAAC |
| Bacteroides dorei DSM 17855 | BACDOR_02922 | -115 | 5.4 | TCCGTGTGCGTGCACAAA |
| -32 | 5.5 | AGTGTGTACGAGCACAAT | ||
| Bacteroides eggerthii DSM 20697 | BACEGG_01787 | 39 | 5.9 | TTCGTGTGCGGGCACAAA |
| 121 | 6 | ATTGTGTACGAACACAAA | ||
| Bacteroides fragilis NCTC 9343 | BF2720 | -125 | 5.5 | TCCGTGTGCGGACACAAA |
| -43 | 5.7 | AGTGTGTCCGGGCACAAA | ||
| Bacteroides ovatus ATCC 8483 | BACOVA_03831 | -125 | 5.9 | TTCGTGTGCGGGCACAAA |
| -43 | 6 | ATTGTGTGCGAGCACAAA | ||
| Bacteroides plebeius DSM 17135 | BACPLE_00833 | -123 | 6.1 | TTTGTGTACGCACACAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_00506 | 39 | 5.9 | TTCGTGTGCGGGCACAAA |
| 121 | 5.9 | ATTGTGCACGGGCACAAA | ||
| Bacteroides thetaiotaomicron VPI-5482 | BT0487 | -124 | 5.9 | TTCGTGTGCGGGCACAAA |
| -42 | 5.6 | ATTGTGTGCGAGCACATA | ||
| Bacteroides uniformis ATCC 8492 | BACUNI_01826 | -210 | 5.8 | TTCGTGTACGGGCACAAA |
| -128 | 5.6 | ATTGTGTGCGAGCACAAG | ||
| Bacteroides vulgatus ATCC 8482 | BVU_3054 | -116 | 5.4 | TCCGTGTGCGTGCACAAA |
| -33 | 5.5 | AGTGTGCACGAGCACAAT | ||