Regulog HTCS_Pga - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Pectic galactan utilization |
| Effector: | Pectic galactan |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Pectic galactan
- By pathway - Pectic galactan utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 6 | 1 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | ||
| Bacteroides eggerthii DSM 20697 | ||
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 1 | 1 |
| Bacteroides plebeius DSM 17135 | ||
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 6 | 1 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ganC |
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Bacteroides cellulosilyticus DSM 14838 Site: position = -100 score = 10.6753 sequence = CATGTCCTTTTTGT-(7)-TATGTCCGATATCT Gene: BACCELL_05455: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Bacteroides ovatus ATCC 8483 Site: position = -99 score = 11.9127 sequence = TTCGTCCTATTTTT-(7)-TATGTCCAATCTGT Gene: BACOVA_05493: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -99 score = 11.9127 sequence = TTCGTCCTATTTTT-(7)-TATGTCCAATCTGT Gene: BT4672: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89) |
| susC_Pga |
Gene: BACCELL_05454: TonB-dependent outer membrane transporter of pectic galactan oligomers |
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Gene: BACOVA_05491: TonB-dependent outer membrane transporter of pectic galactan oligomers |
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Gene: BT4671: TonB-dependent outer membrane transporter of pectic galactan oligomers |
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TonB-dependent outer membrane transporter of pectic galactan oligomers |
| susD_Pga |
Gene: BACCELL_05453: Outer membrane polysaccharide binding protein for pectic galactan oligomers |
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Gene: BF3145: Outer membrane polysaccharide binding protein for pectic galactan oligomers |
Gene: BACOVA_05490: Outer membrane polysaccharide binding protein for pectic galactan oligomers |
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Gene: BT4670: Outer membrane polysaccharide binding protein for pectic galactan oligomers |
Gene: BACUNI_01211: Outer membrane polysaccharide binding protein for pectic galactan oligomers |
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Outer membrane polysaccharide binding protein for pectic galactan oligomers |
| BT4669 |
Gene: BACCELL_05452: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
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Gene: BACDOR_02281: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
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Gene: BACOVA_05489: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
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Gene: BT4669: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
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Gene: BVU_1378: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization |
| ganB |
Gene: BACCELL_05451: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Gene: BACDOR_02273: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Gene: BACOVA_05488: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Gene: BACSTE_01653: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
Gene: BT4668: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
Gene: BACUNI_01204: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
| bgaA |
Gene: BACCELL_05450: Putative beta-galactosidase |
Gene: BACCOPRO_00203: Putative beta-galactosidase |
Gene: BACDOR_00672: Putative beta-galactosidase |
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Gene: BF1815: Putative beta-galactosidase |
Gene: BACOVA_05487: Putative beta-galactosidase |
Gene: BACPLE_00247: Putative beta-galactosidase |
Gene: BACSTE_01654: Putative beta-galactosidase |
Gene: BT4667: Putative beta-galactosidase |
Gene: BACUNI_01205: Putative beta-galactosidase |
Gene: BVU_4134: Putative beta-galactosidase |
Putative beta-galactosidase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |