Regulog HTCS_Pga - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	activator
Biological process:	Pectic galactan utilization
Effector:	Pectic galactan
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - [Other]
By effector - Pectic galactan
By pathway - Pectic galactan utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	6	1
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	1	1
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482	6	1
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ganC	* Bacteroides cellulosilyticus DSM 14838 Site: position = -100 score = 10.6753 sequence = CATGTCCTTTTTGT-(7)-TATGTCCGATATCT Gene: BACCELL_05455: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -99 score = 11.9127 sequence = TTCGTCCTATTTTT-(7)-TATGTCCAATCTGT Gene: BACOVA_05493: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -99 score = 11.9127 sequence = TTCGTCCTATTTTT-(7)-TATGTCCAATCTGT Gene: BT4672: Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted endo-1,4-beta-galactosidase (EC 3.2.1.89)
susC_Pga	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05454: TonB-dependent outer membrane transporter of pectic galactan oligomers	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05491: TonB-dependent outer membrane transporter of pectic galactan oligomers	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4671: TonB-dependent outer membrane transporter of pectic galactan oligomers	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	TonB-dependent outer membrane transporter of pectic galactan oligomers
susD_Pga	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05453: Outer membrane polysaccharide binding protein for pectic galactan oligomers	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF3145: Outer membrane polysaccharide binding protein for pectic galactan oligomers	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05490: Outer membrane polysaccharide binding protein for pectic galactan oligomers	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4670: Outer membrane polysaccharide binding protein for pectic galactan oligomers	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01211: Outer membrane polysaccharide binding protein for pectic galactan oligomers	Bacteroides vulgatus ATCC 8482	Outer membrane polysaccharide binding protein for pectic galactan oligomers
BT4669	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05452: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02281: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05489: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4669: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_1378: Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization	Conserved hypothetical protein, secreted, putatively involved in pectic galactan utilization
ganB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05451: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02273: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05488: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01653: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4668: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01204: Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)	Bacteroides vulgatus ATCC 8482	Pectic galactan endo-1,4-beta-galactosidase (EC 3.2.1.89)
bgaA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05450: Putative beta-galactosidase	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00203: Putative beta-galactosidase	Bacteroides dorei DSM 17855 Gene: BACDOR_00672: Putative beta-galactosidase	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF1815: Putative beta-galactosidase	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05487: Putative beta-galactosidase	Bacteroides plebeius DSM 17135 Gene: BACPLE_00247: Putative beta-galactosidase	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01654: Putative beta-galactosidase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4667: Putative beta-galactosidase	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01205: Putative beta-galactosidase	Bacteroides vulgatus ATCC 8482 Gene: BVU_4134: Putative beta-galactosidase	Putative beta-galactosidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HTCS_Pga - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --