Propagation of Crp regulog to Parabacteroides merdae ATCC 43184
| Source regulog: | Crp - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | |
| Effector: | |
| Phylum: | Bacteroidetes |
| Propagated regulon: | |
| Target genome | Parabacteroides merdae ATCC 43184 |
| Orthologous TF(s) | PARMER_03972 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -111
Score: 4.3 Sequence: ATGTATGTTAAATAACGGGCTT
Locus tag: PARMER_00443
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| PARMER_00443 | -111 | 4.3 | ATGTATGTTAAATAACGGGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylR | ||||
| Ortholog function: Predicted regulator of xylose utilization, NrtR family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04758 | -83 | 4.9 | AATAGTGCTTTATAACATAATA |
| Bacteroides dorei DSM 17855 | BACDOR_00865 | -34 | 4.8 | AATAGTGTTTTAGAACATAATA |
| Bacteroides eggerthii DSM 20697 | BACEGG_02642 | -92 | 4.8 | AATAATGCTTTGTAACATATCA |
| Bacteroides fragilis NCTC 9343 | BF2354 | -81 | 4.6 | AACAATGCTTTATAGCATATTA |
| Bacteroides ovatus ATCC 8483 | BACOVA_02532 | -80 | 4.2 | AACAATGTTTTATAGCATGTTT |
| Bacteroides stercoris ATCC 43183 | BACSTE_01380 | -92 | 4.3 | AATAATGCTTTATAACATTGTA |
| Bacteroides thetaiotaomicron VPI-5482 | BT0791 | -81 | 4.2 | AACAATGTTTTATAGCATGTCA |
| Bacteroides uniformis ATCC 8492 | BACUNI_00695 | -92 | 4.1 | AATAATGCTTTATAATATTATA |
| Bacteroides vulgatus ATCC 8482 | BVU_3955 | -100 | 4.5 | AATAGTGTTTTGGAACATAATA |
|
Position: -89
Score: 4.2 Sequence: ATAAATCTAAAAAAACATAAAA
Locus tag: PARMER_00923
|
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| PARMER_00923 | -89 | 4.2 | ATAAATCTAAAAAAACATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylA | ||||
| Ortholog function: Xylose isomerase (EC 5.3.1.5) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04760 | -83 | 4.9 | AATAGTGCTTTATAACATAATA |
| Bacteroides dorei DSM 17855 | BACDOR_00867 | -34 | 4.8 | AATAGTGTTTTAGAACATAATA |
| Bacteroides eggerthii DSM 20697 | BACEGG_02644 | -92 | 4.8 | AATAATGCTTTGTAACATATCA |
| Bacteroides fragilis NCTC 9343 | BF2356 | -81 | 4.6 | AACAATGCTTTATAGCATATTA |
| Bacteroides ovatus ATCC 8483 | BACOVA_02534 | -80 | 4.2 | AACAATGTTTTATAGCATGTTT |
| Bacteroides thetaiotaomicron VPI-5482 | BT0793 | -81 | 4.2 | AACAATGTTTTATAGCATGTCA |
| Bacteroides uniformis ATCC 8492 | BACUNI_00693 | -92 | 4.1 | AATAATGCTTTATAATATTATA |
| Bacteroides vulgatus ATCC 8482 | BVU_3953 | -100 | 4.5 | AATAGTGTTTTGGAACATAATA |
|
Position: -20
Score: 4.3 Sequence: AAGTATGTTATATAGCAGTCGT
Locus tag: PARMER_03972
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| PARMER_03972 | -20 | 4.3 | AAGTATGTTATATAGCAGTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: transcriptional regulator, Crp/Fnr family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03476 | -33 | 4.7 | ATTTGTGCTGTATAACACAGTT |
| Bacteroides coprophilus DSM 18228 | BACCOPRO_01276 | -33 | 4.6 | TTTTGTGCTTAATAACACGATT |
| Bacteroides dorei DSM 17855 | BACDOR_01607 | -35 | 4.1 | ATTTGTGCTCTATAACACGGTT |
| Bacteroides eggerthii DSM 20697 | BACEGG_01340 | -33 | 4.6 | ATTTGTGCTGTACAACACAGTT |
| Bacteroides fragilis NCTC 9343 | BF0954 | -33 | 4.6 | ATTTGTGCTTTATAACACAGTT |
| Bacteroides ovatus ATCC 8483 | BACOVA_05152 | -33 | 4.8 | TTTTGTGCTGTATAACACAGTT |
| Bacteroides plebeius DSM 17135 | BACPLE_02167 | -16 | 4.1 | CTTTGTGCTTAATAACATGGTT |
| Bacteroides stercoris ATCC 43183 | BACSTE_03515 | -33 | 4.6 | ATTTGTGCTGTACAACACAGTT |
| Bacteroides thetaiotaomicron VPI-5482 | BT4338 | -33 | 4.8 | TTTTGTGCTGTATAACACAGTT |
| Bacteroides uniformis ATCC 8492 | BACUNI_04721 | -33 | 4.7 | ATTTGTGCTGTATAACACAGTT |
| Bacteroides vulgatus ATCC 8482 | BVU_3580 | -35 | 4.1 | ATTTGTGCTCTATAACACGGTT |
|
Position: -90
Score: 4.9 Sequence: CTTTATGCTAAAAAACATCTAT
Locus tag: PARMER_04062
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| PARMER_04062 | -90 | 4.9 | CTTTATGCTAAAAAACATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: PF09719 | ||||
| Ortholog function: Putative redox-active protein (C_GCAxxG_C_C) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04404 | -142 | 5.6 | TTTTATGACATATAACATAAAA |
| -110 | 5.8 | TAATGTGTTATATAACATAAAT | ||
| Bacteroides dorei DSM 17855 | BACDOR_00927 | -110 | 4.6 | AAAAGTGTTGAATAACATAATT |
| Bacteroides eggerthii DSM 20697 | BACEGG_02494 | -109 | 5.6 | TAACGTGTTATATAACATAAAA |
| Bacteroides fragilis NCTC 9343 | BF2582 | -99 | 5.9 | TAATCTGTTATATAACATAATT |
| Bacteroides ovatus ATCC 8483 | BACOVA_02257 | -107 | 5.3 | TAAAGTGTTATATAACATAAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_01186 | -110 | 5.4 | TAACGTGCTATATAACATAAAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_02281 | -105 | 5.3 | TAACGTGTTGTATAACATAAAT |
| Bacteroides vulgatus ATCC 8482 | BVU_3908 | -104 | 4.6 | AAAAGTGTTGAATAACATAATT |