Regulog UxuR - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	Glucuronate
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - LacI
By effector - Glucuronate
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	3	1
Bacteroides plebeius DSM 17135	3	1
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482	3	1
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uxuR	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -79 score = 5.62319 sequence = TGTGTGTGCGCACACACT Gene: BACOVA_00860: Predicted transcriptional regulator for glucuronate catabolism, LacI family	* Bacteroides plebeius DSM 17135 Site: position = -35 score = 5.64746 sequence = TGCGTGTTCGCACACACG Gene: BACPLE_03706: Predicted transcriptional regulator for glucuronate catabolism, LacI family	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -124 score = 5.45269 sequence = CGTGTGTGCGCACACACT Gene: BT1434: Predicted transcriptional regulator for glucuronate catabolism, LacI family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Predicted transcriptional regulator for glucuronate catabolism, LacI family
uxuB	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01659: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02114: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03381: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides fragilis NCTC 9343 Gene: BF0143: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_00859: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03707: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_02444: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1433: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01039: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacteroides vulgatus ATCC 8482 Gene: BVU_1261: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
uxuA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01660: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02115: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03380: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides fragilis NCTC 9343 Gene: BF0142: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_00858: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03708: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT1432: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_01040: Mannonate dehydratase (EC 4.2.1.8)	Bacteroides vulgatus ATCC 8482 Gene: BVU_1262: Mannonate dehydratase (EC 4.2.1.8)	Mannonate dehydratase (EC 4.2.1.8)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --