Regulog PerR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Peroxide stress response; Oxidative stress response |
| Effector: | Hydrogen peroxide |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - FUR
- By effector - Hydrogen peroxide
- By pathway - Peroxide stress response
- By pathway - Oxidative stress response
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 9 | 4 |
| Bacteroides dorei DSM 17855 | 13 | 7 |
| Bacteroides eggerthii DSM 20697 | 9 | 4 |
| Bacteroides fragilis NCTC 9343 | 6 | 3 |
| Bacteroides ovatus ATCC 8483 | 5 | 3 |
| Bacteroides plebeius DSM 17135 | 8 | 5 |
| Bacteroides stercoris ATCC 43183 | 10 | 4 |
| Bacteroides thetaiotaomicron VPI-5482 | 8 | 3 |
| Bacteroides uniformis ATCC 8492 | 10 | 5 |
| Bacteroides vulgatus ATCC 8482 | 12 | 7 |
| Bacteroides coprophilus DSM 18228 | 9 | 6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| perR |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -36 score = 6.58088 sequence = AAAAATGTAATTATTACAAGTTT Gene: BACCELL_05678: Peroxide stress regulator PerR, Fur family |
*
Bacteroides dorei DSM 17855 Site: position = -30 score = 6.05145 sequence = AAAATTGTAATAGTTACAAAAAG Gene: BACDOR_03683: Peroxide stress regulator PerR, Fur family |
*
Bacteroides eggerthii DSM 20697 Site: position = -37 score = 6.58088 sequence = AAAAATGTAATTATTACAAGTTT Gene: BACEGG_01512: Peroxide stress regulator PerR, Fur family |
*
Bacteroides fragilis NCTC 9343 Site: position = -39 score = 6.80317 sequence = AAAATTGTAATGAATACAATTTT Gene: BF3019: Peroxide stress regulator PerR, Fur family |
*
Bacteroides ovatus ATCC 8483 Site: position = -40 score = 6.32635 sequence = ATAATTGTAATGAATACAACTTT Gene: BACOVA_00376: Peroxide stress regulator PerR, Fur family |
*
Bacteroides plebeius DSM 17135 Site: position = -33 score = 5.89881 sequence = AGAATTGTAACAATTACATAATT Gene: BACPLE_02660: Peroxide stress regulator PerR, Fur family |
*
Bacteroides stercoris ATCC 43183 Site: position = -37 score = 6.58088 sequence = AAAAATGTAATTATTACAAGTTT Gene: BACSTE_01825: Peroxide stress regulator PerR, Fur family |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -40 score = 6.32635 sequence = ATAATTGTAATGAATACAACTTT Gene: BT0215: Peroxide stress regulator PerR, Fur family |
*
Bacteroides uniformis ATCC 8492 Site: position = -38 score = 6.58088 sequence = AAAAATGTAATAATTACAAGTTT Gene: BACUNI_01378: Peroxide stress regulator PerR, Fur family |
*
Bacteroides vulgatus ATCC 8482 Site: position = -30 score = 6.05145 sequence = AAAATTGTAATAGTTACAAAAAG Gene: BVU_2366: Peroxide stress regulator PerR, Fur family |
*
Bacteroides coprophilus DSM 18228 Site: position = -33 score = 6.11174 sequence = AAAATTGTAATAGTTACAGAATT Gene: BACCOPRO_01403: Peroxide stress regulator PerR, Fur family |
Peroxide stress regulator PerR, Fur family |
| rbr |
Gene: BACCELL_05679: Rubrerythrin |
Gene: BACDOR_03684: Rubrerythrin |
Gene: BACEGG_01511: Rubrerythrin |
Gene: BF3018: Rubrerythrin |
Gene: BACOVA_00378: Rubrerythrin |
Gene: BACPLE_02659: Rubrerythrin |
Gene: BACSTE_01824: Rubrerythrin |
Gene: BT0216: Rubrerythrin |
Gene: BACUNI_01379: Rubrerythrin |
Gene: BVU_2367: Rubrerythrin |
Gene: BACCOPRO_01402: Rubrerythrin |
Rubrerythrin |
| CRON 2. | ||||||||||||
| rbr2 |
Gene: BACCELL_02076: Rubrerythrin |
*
Bacteroides dorei DSM 17855 Site: position = -93 score = 6.65395 sequence = ATAATTGTAATGAATACAATTTT Gene: BACDOR_01950: Rubrerythrin |
Gene: BACEGG_03320: Rubrerythrin |
Gene: BF0020: Rubrerythrin |
Gene: BACOVA_02877: Rubrerythrin |
*
Bacteroides plebeius DSM 17135 Site: position = -94 score = 6.67315 sequence = AAAATTGTAATGATTTCAAATTT Gene: BACPLE_00297: Rubrerythrin |
Gene: BACSTE_02366: Rubrerythrin |
Gene: BT3182: Rubrerythrin |
Gene: BACUNI_00484: Rubrerythrin |
*
Bacteroides vulgatus ATCC 8482 Site: position = -92 score = 6.36058 sequence = GTAATTGTAATAAATACAATTTT Gene: BVU_1137: Rubrerythrin |
*
Bacteroides coprophilus DSM 18228 Site: position = -93 score = 6.80585 sequence = AAAGTTGTAATGATTACAATTTT Gene: BACCOPRO_00127: Rubrerythrin |
Rubrerythrin |
| CRON 3. | ||||||||||||
| acn |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -47 score = 6.11365 sequence = TAATTTGTAATCTTTACAATATT Gene: BACCELL_00993: Aconitate hydratase (EC 4.2.1.3) |
*
Bacteroides dorei DSM 17855 Site: position = -25 score = 5.94674 sequence = AAAACTGTAATAATTATAAATTG Gene: BACDOR_03102: Aconitate hydratase (EC 4.2.1.3) |
*
Bacteroides eggerthii DSM 20697 Site: position = -48 score = 6.11365 sequence = TAATTTGTAATCTTTACAATATT Gene: BACEGG_00294: Aconitate hydratase (EC 4.2.1.3) |
Gene: BF3543: Aconitate hydratase (EC 4.2.1.3) |
Gene: BACOVA_03310: Aconitate hydratase (EC 4.2.1.3) |
Gene: BACPLE_01844: Aconitate hydratase (EC 4.2.1.3) |
*
Bacteroides stercoris ATCC 43183 Site: position = -45 score = 6.11365 sequence = TAATTTGTAATATTTACAATATT Gene: BACSTE_03162: Aconitate hydratase (EC 4.2.1.3) |
Gene: BT2072: Aconitate hydratase (EC 4.2.1.3) |
*
Bacteroides uniformis ATCC 8492 Site: position = -45 score = 5.96443 sequence = TAATTTGTAATCTTTACAATAAT Gene: BACUNI_01674: Aconitate hydratase (EC 4.2.1.3) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -19 score = 5.61328 sequence = AAAACTGTAATAATTATAAATGG Gene: BVU_1959: Aconitate hydratase (EC 4.2.1.3) |
Gene: BACCOPRO_00926: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
| icd |
Gene: BACCELL_00994: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACDOR_03101: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACEGG_00295: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BF3542: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACOVA_03311: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACPLE_01845: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACSTE_03161: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BT2071: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACUNI_01673: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BVU_1960: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BACCOPRO_00927: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| gltA |
Gene: BACCELL_00995: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACDOR_03100: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACEGG_00296: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BF3541: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACOVA_03312: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACPLE_01846: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACSTE_03160: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BT_2070: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACUNI_01672: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BVU_1961: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BACCOPRO_00928: Citrate synthase (si) (EC 2.3.3.1) |
Citrate synthase (si) (EC 2.3.3.1) |
| CRON 4. | ||||||||||||
| PF05140 |
|
|
|
*
Bacteroides fragilis NCTC 9343 Site: position = -86 score = 6.20775 sequence = AAAATTGTATTTAATACAAATTA Gene: BF2364: ResB protein required for cytochrome c biosynthesis |
|
*
Bacteroides plebeius DSM 17135 Site: position = -79 score = 5.92314 sequence = AGATTTGTTATCTTTACAATTTT Gene: BACPLE_02893: ResB protein required for cytochrome c biosynthesis |
|
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -94 score = 6.13119 sequence = CTACTTGTAACGATTACAATTTT Gene: BT1604: ResB protein required for cytochrome c biosynthesis |
|
|
*
Bacteroides coprophilus DSM 18228 Site: position = -79 score = 5.96296 sequence = ACAATTGTTATCTTTACAATTTT Gene: BACCOPRO_00708: ResB protein required for cytochrome c biosynthesis |
ResB protein required for cytochrome c biosynthesis |
| ccsA |
|
|
|
Gene: BF2363: Cytochrome c biogenesis protein CcsA |
|
Gene: BACPLE_02892: Cytochrome c biogenesis protein CcsA |
|
Gene: BT1605: Cytochrome c biogenesis protein CcsA |
|
|
Gene: BACCOPRO_00709: Cytochrome c biogenesis protein CcsA |
Cytochrome c biogenesis protein CcsA |
| ccp |
|
|
|
Gene: BF2362: Cytochrome c551 peroxidase (EC 1.11.1.5) |
|
Gene: BACPLE_02891: Cytochrome c551 peroxidase (EC 1.11.1.5) |
|
Gene: BT1606: Cytochrome c551 peroxidase (EC 1.11.1.5) |
|
|
Gene: BACCOPRO_00817: Cytochrome c551 peroxidase (EC 1.11.1.5) |
Cytochrome c551 peroxidase (EC 1.11.1.5) |
| CRON 5. | ||||||||||||
| tpx |
Gene: BACCELL_00326: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
*
Bacteroides dorei DSM 17855 Site: position = -44 score = 5.69716 sequence = AAATTTGTTATCATTACAGTATC Gene: BACDOR_00877: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Gene: BACEGG_01719: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Gene: BF2777: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Gene: BACOVA_00596: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
2
Bacteroides plebeius DSM 17135 Gene: BACPLE_03375: Thiol peroxidase, Tpx-type (EC 1.11.1.15) Gene: BACPLE_02927: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Gene: BACSTE_00694: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Gene: BT1329: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
*
Bacteroides uniformis ATCC 8492 Site: position = -35 score = 5.00187 sequence = TAATTTGTTATGTATACATATAA Gene: BACUNI_04341: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -44 score = 5.69716 sequence = AAATTTGTTATCATTACAGTATC Gene: BVU_3944: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
*2
Bacteroides coprophilus DSM 18228 Site: position = -56 score = 6.28634 sequence = ATATTTGTAATTATTACATATCT Gene: BACCOPRO_01040: Thiol peroxidase, Tpx-type (EC 1.11.1.15) Gene: BACCOPRO_00401: Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
Thiol peroxidase, Tpx-type (EC 1.11.1.15) |
| CRON 6. | ||||||||||||
| ahpC |
Gene: BACCELL_01721: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
*
Bacteroides dorei DSM 17855 Site: position = -55 score = 5.99653 sequence = GCAAATGTAATAATTACAATTTA Gene: BACDOR_04898: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BACEGG_03370: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BF1210: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BACOVA_02068: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
|
Gene: BACSTE_02431: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BT2812: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BACUNI_01060: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -55 score = 5.99653 sequence = GCAAATGTAATAATTACAATTTA Gene: BVU_0847: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
*
Bacteroides coprophilus DSM 18228 Site: position = -55 score = 6.08268 sequence = TGCATTGTAATAATTACAAATTT Gene: BACCOPRO_03297: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
| ahpF |
Gene: BACCELL_01722: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BACDOR_04897: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BACEGG_03369: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BF1209: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BACOVA_02067: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
|
Gene: BACSTE_02430: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BT2811: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BACUNI_01061: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BVU_0846: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Gene: BACCOPRO_03296: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) |
| CRON 7. | ||||||||||||
| PF01637 |
|
|
|
*
Bacteroides fragilis NCTC 9343 Site: position = -36 score = 5.86804 sequence = ATATTTGCAATAATTATAAATAT Gene: BF3647: Archaeal ATPase family protein |
*
Bacteroides ovatus ATCC 8483 Site: position = -33 score = 5.6231 sequence = ATATTTGTAATAATTGTATTTAT Gene: BACOVA_02789: Archaeal ATPase family protein |
|
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|
|
|
|
Archaeal ATPase family protein |
| CRON 8. | ||||||||||||
| ftn |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -40 score = 5.76683 sequence = ACTTTTGTAATGATTTCAAATTA Gene: BACCELL_00354: Ferritin |
*
Bacteroides dorei DSM 17855 Site: position = -41 score = 5.71924 sequence = ATATTTGCAACAGTTACAATTTA Gene: BACDOR_04357: Ferritin |
*
Bacteroides eggerthii DSM 20697 Site: position = -39 score = 6.29861 sequence = ATATTTGTAATCATTTCAATTTA Gene: BACEGG_01676: Ferritin |
|
|
|
*
Bacteroides stercoris ATCC 43183 Site: position = -39 score = 6.29861 sequence = ATATTTGTAATCATTTCAATTTA Gene: BACSTE_00720: Ferritin |
|
*
Bacteroides uniformis ATCC 8492 Site: position = -36 score = 5.80666 sequence = ACTTTTGTAATGATTTCAATTTA Gene: BACUNI_04391: Ferritin |
*
Bacteroides vulgatus ATCC 8482 Site: position = -40 score = 5.71924 sequence = ATATTTGCAACAGTTACAATTTA Gene: BVU_2754: Ferritin |
|
Ferritin |
| CRON 9. | ||||||||||||
| PF00576 |
|
|
|
|
|
*
Bacteroides plebeius DSM 17135 Site: position = -50 score = 6.07459 sequence = ATATTTGTAATTGTTACAATCTT Gene: BACPLE_03494: Transthyretin family protein |
|
|
|
|
|
Transthyretin family protein |
| CRON 10. | ||||||||||||
| BT1211 |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -29 score = 6.47936 sequence = ATATTTGTAATGATTATAAATTT Gene: BACCELL_04244: hypothetical protein |
*
Bacteroides dorei DSM 17855 Site: position = -34 score = 5.93932 sequence = TTCTTTGTAATTATTACAACTTT Gene: BACDOR_04415: hypothetical protein |
*
Bacteroides eggerthii DSM 20697 Site: position = -30 score = 6.20282 sequence = ATATTTGTAATGATTATAATTTG Gene: BACEGG_02389: hypothetical protein |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -35 score = 6.22455 sequence = ATATTTGTACTCATTACAAATTA Gene: BACOVA_03967: hypothetical protein |
*
Bacteroides plebeius DSM 17135 Site: position = -28 score = 5.49418 sequence = TACTTTGTAATCATTATAAAAAT Gene: BACPLE_02813: hypothetical protein |
*
Bacteroides stercoris ATCC 43183 Site: position = -29 score = 6.20282 sequence = ATATTTGTAATGATTATAATTTG Gene: BACSTE_00833: hypothetical protein |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -35 score = 6.1565 sequence = ATATTTGTACTCATTACAAATTC Gene: BT1211: hypothetical protein |
*
Bacteroides uniformis ATCC 8492 Site: position = 70 score = 6.51919 sequence = ATATTTGTAATCATTATAATTTT Gene: BACUNI_02171: hypothetical protein |
|
*
Bacteroides coprophilus DSM 18228 Site: position = -28 score = 5.16072 sequence = TCCTTTGTAATTATTATAAAAAT Gene: BACCOPRO_00522: hypothetical protein |
hypothetical protein |
| BACSTE_02669 |
|
|
|
|
|
|
Gene: BACSTE_00832: hypothetical protein |
|
|
|
|
hypothetical protein |
| cydA |
Gene: BACCELL_04245: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACDOR_04414: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACEGG_02390: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BF1937: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACOVA_03968: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACPLE_02811: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACSTE_00831: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BT1210: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACUNI_02172: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -276 score = 5.93932 sequence = TTCTTTGTAATTATTACAACTTT Gene: BVU_2799: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Gene: BACCOPRO_00524: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
| cydB |
Gene: BACCELL_04246: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACDOR_04413: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACEGG_02391: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BF1938: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACOVA_03969: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACPLE_02810: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACSTE_00830: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BT1209: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACUNI_02173: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BVU_2798: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: BACCOPRO_00525: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |