Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HTCS_Rgu-1 regulog to Bacteroides plebeius DSM 17135

Reference regulog properties
Source regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides plebeius DSM 17135
Orthologous TF(s) BACPLE_03448
Regulated genes 2
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacteroides plebeius DSM 17135
Locus tag Position Score Sequence
Position: -222
Score: 7
Sequence: CAGTTTTTTCAC-(9)-CAAAAATTGCAA
Locus tag: BACPLE_03118
BACPLE_03118 -222 7 CAGTTTTTTCAC-(9)-CAAAAATTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: GH88
Ortholog function: Glycosyl hydrolase, family 88
Bacteroides dorei DSM 17855 BACDOR_03071 -237 9.5 CAAAAAATCCAC-(9)-CAAATAGTGCAC
Bacteroides ovatus ATCC 8483 BACOVA_05039 -267 9 CAAAAAATACAC-(9)-CAATTAGTCCAC
Bacteroides plebeius DSM 17135 BACPLE_03118 -222 7 CAGTTTTTTCAC-(9)-CAAAAATTGCAA
Bacteroides stercoris ATCC 43183 BACSTE_03277 -205 8.4 CAAAAAATACAC-(9)-CAATTTGTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4186 -265 9 CAAAAAATACAC-(9)-CAATAACTCCAC
Bacteroides vulgatus ATCC 8482 BVU_1984 -237 9.5 CAAAAAATCCAC-(9)-CAAATAGTGCAC
Position: -108
Score: 7.7
Sequence: CAATTTTTATAC-(9)-TGAAAACTACAC
Locus tag: BACPLE_03451
BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Bacteroides dorei DSM 17855 BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00863 -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC
Bacteroides ovatus ATCC 8483 BACOVA_04900 -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA
Bacteroides plebeius DSM 17135 BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Bacteroides stercoris ATCC 43183 BACSTE_03304 -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Bacteroides vulgatus ATCC 8482 BVU_1797 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
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