Regulog UxaR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | Glucuronate; Galacturonate |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - LacI
- By effector - Glucuronate
- By effector - Galacturonate
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 3 | 2 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | ||
| Bacteroides eggerthii DSM 20697 | 3 | 2 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 3 | 2 |
| Bacteroides plebeius DSM 17135 | ||
| Bacteroides stercoris ATCC 43183 | 2 | 2 |
| Bacteroides thetaiotaomicron VPI-5482 | 3 | 2 |
| Bacteroides uniformis ATCC 8492 | 3 | 2 |
| Bacteroides vulgatus ATCC 8482 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| uxaC |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -166 score = 6.11462 sequence = GCAAAGATACGAATTATTTT Gene: BACCELL_04798: Uronate isomerase (EC 5.3.1.12) |
|
Gene: BACDOR_02901: Uronate isomerase (EC 5.3.1.12) |
*
Bacteroides eggerthii DSM 20697 Site: position = -166 score = 5.97342 sequence = GCAAAGATACGAATAATTTT Gene: BACEGG_02664: Uronate isomerase (EC 5.3.1.12) |
Gene: BF2382: Uronate isomerase (EC 5.3.1.12) |
*
Bacteroides ovatus ATCC 8483 Site: position = -165 score = 6.05427 sequence = GCAAATATACGAATTATTTT Gene: BACOVA_02558: Uronate isomerase (EC 5.3.1.12) |
Gene: BACPLE_00744: Uronate isomerase (EC 5.3.1.12) |
*
Bacteroides stercoris ATCC 43183 Site: position = -166 score = 6.11462 sequence = GCAAAGATACGAATTATTTT Gene: BACSTE_01410: Uronate isomerase (EC 5.3.1.12) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -166 score = 6.05427 sequence = GCAAATATACGAATTATTTT Gene: BT_0823: Uronate isomerase (EC 5.3.1.12) |
*
Bacteroides uniformis ATCC 8492 Site: position = -166 score = 6.11462 sequence = GCAAAGATACGAATTATTTT Gene: BACUNI_00659: Uronate isomerase (EC 5.3.1.12) |
Gene: BVU_3074: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| CRON 2. | ||||||||||||
| uxaR |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -91 score = 6.11462 sequence = AAAATAATTCGTATCTTTGC Gene: BACCELL_04799: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
|
|
*
Bacteroides eggerthii DSM 20697 Site: position = -85 score = 5.97342 sequence = AAAATTATTCGTATCTTTGC Gene: BACEGG_02665: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -53 score = 6.05427 sequence = AAAATAATTCGTATATTTGC Gene: BACOVA_02559: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
|
*
Bacteroides stercoris ATCC 43183 Site: position = -84 score = 6.11462 sequence = AAAATAATTCGTATCTTTGC Gene: BACSTE_01411: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -92 score = 6.05427 sequence = AAAATAATTCGTATATTTGC Gene: BT0824: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
*
Bacteroides uniformis ATCC 8492 Site: position = -87 score = 6.11462 sequence = AAAATAATTCGTATCTTTGC Gene: BACUNI_00658: Predicted transcriptional regulator for galacturonate catabolism, LacI family |
|
Predicted transcriptional regulator for galacturonate catabolism, LacI family |
| uxaB |
Gene: BACCELL_04800: Altronate oxidoreductase (EC 1.1.1.58) |
|
Gene: BACDOR_02900: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BACEGG_02666: Altronate oxidoreductase (EC 1.1.1.58) |
|
Gene: BACOVA_02560: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BACPLE_00745: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BACSTE_01413: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BT0825: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BACUNI_00657: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BVU_3075: Altronate oxidoreductase (EC 1.1.1.58) |
Altronate oxidoreductase (EC 1.1.1.58) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |