Regulog RhaR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - AraC
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 5 | 1 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 4 | 1 |
| Bacteroides eggerthii DSM 20697 | 3 | 1 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 5 | 1 |
| Bacteroides plebeius DSM 17135 | ||
| Bacteroides stercoris ATCC 43183 | 6 | 1 |
| Bacteroides thetaiotaomicron VPI-5482 | 5 | 1 |
| Bacteroides uniformis ATCC 8492 | 5 | 1 |
| Bacteroides vulgatus ATCC 8482 | 4 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rhaB |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -88 score = 7.12037 sequence = TCAGAAA-(14)-TCAAAAC Gene: BACCELL_01175: Rhamnulokinase (EC 2.7.1.5) |
|
*
Bacteroides dorei DSM 17855 Site: position = -100 score = 7.08695 sequence = CCAAATC-(14)-TCAAAAA Gene: BACDOR_01175: Rhamnulokinase (EC 2.7.1.5) |
*
Bacteroides eggerthii DSM 20697 Site: position = -95 score = 7.74299 sequence = TCAAATC-(14)-TCAAAAT Gene: BACEGG_03663: Rhamnulokinase (EC 2.7.1.5) |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -107 score = 8.14966 sequence = TCAAAAT-(14)-TCAAAAT Gene: BACOVA_03601: Rhamnulokinase (EC 2.7.1.5) |
Gene: BACPLE_00612: Rhamnulokinase (EC 2.7.1.5) |
*
Bacteroides stercoris ATCC 43183 Site: position = -95 score = 7.74299 sequence = TCAAATC-(14)-TCAAAAT Gene: BACSTE_00367: Rhamnulokinase (EC 2.7.1.5) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -107 score = 8.14966 sequence = TCAAAAT-(14)-TCAAAAT Gene: BT3763: Rhamnulokinase (EC 2.7.1.5) |
*
Bacteroides uniformis ATCC 8492 Site: position = -95 score = 7.51694 sequence = TCAAATC-(14)-TCAAAAA Gene: BACUNI_00421: Rhamnulokinase (EC 2.7.1.5) |
*
Bacteroides vulgatus ATCC 8482 Site: position = -99 score = 7.08695 sequence = CCAAATC-(14)-TCAAAAA Gene: BVU_0595: Rhamnulokinase (EC 2.7.1.5) |
Rhamnulokinase (EC 2.7.1.5) |
| rhaA |
Gene: BACCELL_01174: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: BACDOR_01174: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BACEGG_03664: L-rhamnose isomerase (EC 5.3.1.14) |
|
Gene: BACOVA_03602: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BACPLE_00613: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BACSTE_00366: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BT3764: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BACUNI_00420: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: BVU_0596: L-rhamnose isomerase (EC 5.3.1.14) |
L-rhamnose isomerase (EC 5.3.1.14) |
| rhaT |
Gene: BACCELL_01173: L-rhamnose-proton symporter |
|
Gene: BACDOR_01173: L-rhamnose-proton symporter |
Gene: BACEGG_03665: L-rhamnose-proton symporter |
|
Gene: BACOVA_03603: L-rhamnose-proton symporter |
Gene: BACPLE_00614: L-rhamnose-proton symporter |
Gene: BACSTE_00365: L-rhamnose-proton symporter |
Gene: BT3765: L-rhamnose-proton symporter |
Gene: BACUNI_00419: L-rhamnose-proton symporter |
Gene: BVU_0597: L-rhamnose-proton symporter |
L-rhamnose-proton symporter |
| rhaD |
Gene: BACCELL_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
|
Gene: BACDOR_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BACEGG_03666: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
|
Gene: BACOVA_03604: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BACPLE_00615: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BACSTE_00364: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BT3766: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BACUNI_00418: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: BVU_0598: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
| rhaO |
Gene: BACCELL_04671: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACCOPRO_03382: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACDOR_02104: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACEGG_03667: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BF0212: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACOVA_03605: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACPLE_00616: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACSTE_00363: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BT3767: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BACUNI_00417: Lactaldehyde reductase (EC 1.1.1.77) |
Gene: BVU_1251: Lactaldehyde reductase (EC 1.1.1.77) |
Lactaldehyde reductase (EC 1.1.1.77) |
| rhiN |
Gene: BACCELL_01171: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BACSTE_00362: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |