Regulog RhaR - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - AraC
By effector - Rhamnose
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	5	1
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855	4	1
Bacteroides eggerthii DSM 20697	3	1
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	5	1
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183	6	1
Bacteroides thetaiotaomicron VPI-5482	5	1
Bacteroides uniformis ATCC 8492	5	1
Bacteroides vulgatus ATCC 8482	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rhaB	* Bacteroides cellulosilyticus DSM 14838 Site: position = -88 score = 7.12037 sequence = TCAGAAA-(14)-TCAAAAC Gene: BACCELL_01175: Rhamnulokinase (EC 2.7.1.5)	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -100 score = 7.08695 sequence = CCAAATC-(14)-TCAAAAA Gene: BACDOR_01175: Rhamnulokinase (EC 2.7.1.5)	* Bacteroides eggerthii DSM 20697 Site: position = -95 score = 7.74299 sequence = TCAAATC-(14)-TCAAAAT Gene: BACEGG_03663: Rhamnulokinase (EC 2.7.1.5)	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -107 score = 8.14966 sequence = TCAAAAT-(14)-TCAAAAT Gene: BACOVA_03601: Rhamnulokinase (EC 2.7.1.5)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00612: Rhamnulokinase (EC 2.7.1.5)	* Bacteroides stercoris ATCC 43183 Site: position = -95 score = 7.74299 sequence = TCAAATC-(14)-TCAAAAT Gene: BACSTE_00367: Rhamnulokinase (EC 2.7.1.5)	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -107 score = 8.14966 sequence = TCAAAAT-(14)-TCAAAAT Gene: BT3763: Rhamnulokinase (EC 2.7.1.5)	* Bacteroides uniformis ATCC 8492 Site: position = -95 score = 7.51694 sequence = TCAAATC-(14)-TCAAAAA Gene: BACUNI_00421: Rhamnulokinase (EC 2.7.1.5)	* Bacteroides vulgatus ATCC 8482 Site: position = -99 score = 7.08695 sequence = CCAAATC-(14)-TCAAAAA Gene: BVU_0595: Rhamnulokinase (EC 2.7.1.5)	Rhamnulokinase (EC 2.7.1.5)
rhaA	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01174: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_01174: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03664: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03602: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00613: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00366: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3764: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00420: L-rhamnose isomerase (EC 5.3.1.14)	Bacteroides vulgatus ATCC 8482 Gene: BVU_0596: L-rhamnose isomerase (EC 5.3.1.14)	L-rhamnose isomerase (EC 5.3.1.14)
rhaT	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01173: L-rhamnose-proton symporter	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_01173: L-rhamnose-proton symporter	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03665: L-rhamnose-proton symporter	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03603: L-rhamnose-proton symporter	Bacteroides plebeius DSM 17135 Gene: BACPLE_00614: L-rhamnose-proton symporter	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00365: L-rhamnose-proton symporter	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3765: L-rhamnose-proton symporter	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00419: L-rhamnose-proton symporter	Bacteroides vulgatus ATCC 8482 Gene: BVU_0597: L-rhamnose-proton symporter	L-rhamnose-proton symporter
rhaD	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03666: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03604: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00615: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00364: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3766: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00418: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Bacteroides vulgatus ATCC 8482 Gene: BVU_0598: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
rhaO	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04671: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03382: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides dorei DSM 17855 Gene: BACDOR_02104: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_03667: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides fragilis NCTC 9343 Gene: BF0212: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03605: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00616: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00363: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3767: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00417: Lactaldehyde reductase (EC 1.1.1.77)	Bacteroides vulgatus ATCC 8482 Gene: BVU_1251: Lactaldehyde reductase (EC 1.1.1.77)	Lactaldehyde reductase (EC 1.1.1.77)
rhiN	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01171: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00362: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaR - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --