Regulog HTCS_Hep - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator (repressor) |
| Biological process: | Heparin utilization |
| Effector: | Heparin |
| Phylum: | Bacteroidetes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Heparin
- By pathway - Heparin utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | ||
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | ||
| Bacteroides eggerthii DSM 20697 | 4 | 2 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 12 | 3 |
| Bacteroides plebeius DSM 17135 | ||
| Bacteroides stercoris ATCC 43183 | 6 | 2 |
| Bacteroides thetaiotaomicron VPI-5482 | 12 | 3 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| hepC |
Gene: BACCELL_00780: Heparin lyase I / Heparinase I (EC 4.2.2.7) |
|
|
*
Bacteroides eggerthii DSM 20697 Site: position = -94 score = 8.41062 sequence = ACAAATATAG-(11)-ACAAATAGGA Gene: BACEGG_00070: Heparin lyase I / Heparinase I (EC 4.2.2.7) |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -92 score = 8.46113 sequence = ACAAATGTGA-(11)-ACAAAAGAAA Gene: BACOVA_05497: Heparin lyase I / Heparinase I (EC 4.2.2.7) |
|
*
Bacteroides stercoris ATCC 43183 Site: position = -96 score = 7.85472 sequence = ACAAATATAG-(11)-ACAAATAGGG Gene: BACSTE_03699: Heparin lyase I / Heparinase I (EC 4.2.2.7) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -140 score = 8.30077 sequence = ACAAATGTGA-(11)-ACAAACGAAA Gene: BT4675: Heparin lyase I / Heparinase I (EC 4.2.2.7) |
|
|
Heparin lyase I / Heparinase I (EC 4.2.2.7) |
| CRON 2. | ||||||||||||
| hepL1 |
|
|
|
|
|
*
Bacteroides ovatus ATCC 8483 Site: position = -148 score = 7.57771 sequence = ACATTATTAA-(11)-ACAATATTAA Gene: BACOVA_05478: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
|
*
Bacteroides stercoris ATCC 43183 Site: position = -148 score = 8.69366 sequence = ACAAATACGA-(11)-ACAAATTTAA Gene: BACSTE_03702: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -149 score = 8.51968 sequence = ACAAAAACAA-(11)-ACAAATTTGA Gene: BT4662: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
|
|
Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
| BT4661 |
|
|
|
*
Bacteroides eggerthii DSM 20697 Site: position = -153 score = 8.18803 sequence = ACAAATCTAA-(11)-ACAACTTTGA Gene: BACEGG_00066: Hypothetical protein, presumably involved in heparin utilization |
|
Gene: BACOVA_05477: Hypothetical protein, presumably involved in heparin utilization |
|
Gene: BACSTE_03703: Hypothetical protein, presumably involved in heparin utilization |
Gene: BT4661: Hypothetical protein, presumably involved in heparin utilization |
|
|
Hypothetical protein, presumably involved in heparin utilization |
| susC_Hep-1 |
|
|
|
Gene: BACEGG_00065: TonB-dependent outer membrane transporter of heparin oligosaccharides |
|
Gene: BACOVA_05476: TonB-dependent outer membrane transporter of heparin oligosaccharides |
|
2
Bacteroides stercoris ATCC 43183 Gene: BACSTE_03705: TonB-dependent outer membrane transporter of heparin oligosaccharides Gene: BACSTE_03704: TonB-dependent outer membrane transporter of heparin oligosaccharides |
Gene: BT4660: TonB-dependent outer membrane transporter of heparin oligosaccharides |
|
|
TonB-dependent outer membrane transporter of heparin oligosaccharides |
| susD_Hep |
|
|
|
Gene: BACEGG_00064: Outer membrane polysaccharide binding protein for heparin oligosaccharides |
|
Gene: BACOVA_05475: Outer membrane polysaccharide binding protein for heparin oligosaccharides |
|
Gene: BACSTE_03706: Outer membrane polysaccharide binding protein for heparin oligosaccharides |
Gene: BT4659: Outer membrane polysaccharide binding protein for heparin oligosaccharides |
|
|
Outer membrane polysaccharide binding protein for heparin oligosaccharides |
| CRON 3. | ||||||||||||
| hepH |
|
|
|
Gene: BACEGG_00062: Glucuronyl hydrolase ( 3.2.1.-) |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -140 score = 8.42532 sequence = AGAAATTTAA-(11)-ACAAAATCAA Gene: BACOVA_05474: Glucuronyl hydrolase ( 3.2.1.-) |
|
Gene: BACSTE_03707: Glucuronyl hydrolase ( 3.2.1.-) |
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -140 score = 7.99402 sequence = AGAATATTAA-(11)-ACAAATTCAA Gene: BT4658: Glucuronyl hydrolase ( 3.2.1.-) |
|
|
Glucuronyl hydrolase ( 3.2.1.-) |
| hepL2 |
|
|
|
Gene: BACEGG_00061: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
|
Gene: BACOVA_05473: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
|
Gene: BACSTE_03708: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
Gene: BT4657: Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
|
|
Heparinase III protein / Heparitin sulfate lyase (EC 4.2.2.8) |
| nagS |
|
|
|
Gene: BACEGG_00060: N-acetylglucosamine-6-sulfatase (EC 3.1.6.14) |
|
Gene: BACOVA_05472: N-acetylglucosamine-6-sulfatase (EC 3.1.6.14) |
|
Gene: BACSTE_03709: N-acetylglucosamine-6-sulfatase (EC 3.1.6.14) |
Gene: BT4656: N-acetylglucosamine-6-sulfatase (EC 3.1.6.14) |
|
|
N-acetylglucosamine-6-sulfatase (EC 3.1.6.14) |
| nagX |
Gene: BACCELL_00769: Conserved hypothetical protein |
|
|
Gene: BACEGG_00059: Conserved hypothetical protein |
|
Gene: BACOVA_05471: Conserved hypothetical protein |
|
Gene: BACSTE_03710: Conserved hypothetical protein |
Gene: BT4655: Conserved hypothetical protein |
|
|
Conserved hypothetical protein |
| nagK |
Gene: BACCELL_00768: N-acetylglucosamine kinase (EC 2.7.1.59) |
|
|
Gene: BACEGG_00058: N-acetylglucosamine kinase (EC 2.7.1.59) |
|
Gene: BACOVA_05470: N-acetylglucosamine kinase (EC 2.7.1.59) |
|
Gene: BACSTE_03711: N-acetylglucosamine kinase (EC 2.7.1.59) |
Gene: BT4654: N-acetylglucosamine kinase (EC 2.7.1.59) |
|
|
N-acetylglucosamine kinase (EC 2.7.1.59) |
| nagP |
Gene: BACCELL_00767: N-acetylglucosamine transporter |
|
|
Gene: BACEGG_00057: N-acetylglucosamine transporter |
|
Gene: BACOVA_05469: N-acetylglucosamine transporter |
|
Gene: BACSTE_03712: N-acetylglucosamine transporter |
Gene: BT4653: N-acetylglucosamine transporter |
|
|
N-acetylglucosamine transporter |
| hepE |
Gene: BACCELL_00766: Predicted heparin lyase |
|
|
|
|
Gene: BACOVA_05468: Predicted heparin lyase |
|
|
Gene: BT4652: Predicted heparin lyase |
|
|
Predicted heparin lyase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |