Regulog HTCS_Rgu-2 - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By pathway - Rhamnogalacturonides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | ||
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 28 | 8 |
| Bacteroides eggerthii DSM 20697 | ||
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 27 | 8 |
| Bacteroides plebeius DSM 17135 | 12 | 6 |
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 30 | 8 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 28 | 8 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ramA |
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*
Bacteroides dorei DSM 17855 Site: position = -88 score = 9.61917 sequence = TGAACAATATTCCA-(6)-TGAATAAAATTCCA Gene: BACDOR_00375: Alfa-L-rhamnosidase (EC 3.2.1.40) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -88 score = 9.61917 sequence = TGAACAATATTCCA-(6)-TGAATAAAATTCCA Gene: BVU_0174: Alfa-L-rhamnosidase (EC 3.2.1.40) |
Alfa-L-rhamnosidase (EC 3.2.1.40) |
| BVU_0175 |
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Gene: BACDOR_00374: Predicted methylesterase |
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Gene: BVU_0175: Predicted methylesterase |
Predicted methylesterase |
| rgaE2 |
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Gene: BACDOR_00373: Rhamnogalacturonan endolyase |
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Gene: BVU_0176: Rhamnogalacturonan endolyase |
Rhamnogalacturonan endolyase |
| BVU_0177 |
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Gene: BACDOR_00372: Predicted alpha-L-rhamnosidase, GH28 family |
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Gene: BVU_0177: Predicted alpha-L-rhamnosidase, GH28 family |
Predicted alpha-L-rhamnosidase, GH28 family |
| CRON 2. | ||||||||||||
| BT2680 |
Gene: BACCELL_03334: Beta-galactosidase (EC 3.2.1.23) |
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*
Bacteroides dorei DSM 17855 Site: position = -87 score = 8.99174 sequence = TGAACGAATTTCTA-(6)-TGTATCTTATTCTA Gene: BACDOR_00393: Beta-galactosidase (EC 3.2.1.23) |
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Gene: BACPLE_00248: Beta-galactosidase (EC 3.2.1.23) |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -111 score = 7.47019 sequence = GATTCATTTTTAAA-(6)-TGAACAAATCTCTA Gene: BT2680: Beta-galactosidase (EC 3.2.1.23) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -87 score = 8.99174 sequence = TGAACGAATTTCTA-(6)-TGTATCTTATTCTA Gene: BVU_0162: Beta-galactosidase (EC 3.2.1.23) |
Beta-galactosidase (EC 3.2.1.23) |
| BVU_0161 |
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Gene: BACDOR_00394: Predicted beta-galactosidase, PL11 family |
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Gene: BVU_0161: Predicted beta-galactosidase, PL11 family |
Predicted beta-galactosidase, PL11 family |
| CRON 3. | ||||||||||||
| bguA |
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*
Bacteroides dorei DSM 17855 Site: position = -94 score = 9.29039 sequence = TATACGAATTTCCA-(6)-TGTACTTCTTTCTA Gene: BACDOR_00368: Beta-glucuronidase (EC 3.2.1.31) |
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Bacteroides ovatus ATCC 8483 Site: position = -141 score = 8.19596 sequence = TGGACAATATTTCA-(6)-TGTAGTTTTGTACA Site: position = -83 score = 8.54903 sequence = GATACAATATTCTA-(6)-TGTACATCTTTCTA Gene: BACOVA_04950: Beta-glucuronidase (EC 3.2.1.31) |
*
Bacteroides plebeius DSM 17135 Site: position = -96 score = 8.51916 sequence = TACACAATATTCCA-(6)-TGAAGAATTATCGA Gene: BACPLE_00503: Beta-glucuronidase (EC 3.2.1.31) |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -111 score = 8.54903 sequence = GATACAATATTCTA-(6)-TGTACATCTTTCTA Gene: BT4151: Beta-glucuronidase (EC 3.2.1.31) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -94 score = 9.29039 sequence = TATACGAATTTCCA-(6)-TGTACTTCTTTCTA Gene: BVU_0181: Beta-glucuronidase (EC 3.2.1.31) |
Beta-glucuronidase (EC 3.2.1.31) |
| rghT |
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Gene: BACDOR_00367: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BACOVA_04949: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BT4150: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
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Gene: BVU_0182: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
Rhamnogalacturonan acetylesterase (EC 3.1.1.86) |
| pehX3 |
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Gene: BACDOR_00366: Polygalacturonase (EC 3.2.1.15) |
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2
Bacteroides ovatus ATCC 8483 Gene: BACOVA_04948: Polygalacturonase (EC 3.2.1.15) Gene: BACOVA_04997: Polygalacturonase (EC 3.2.1.15) |
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2
Bacteroides thetaiotaomicron VPI-5482 Gene: BT4148: Polygalacturonase (EC 3.2.1.15) Gene: BT4149: Polygalacturonase (EC 3.2.1.15) |
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Gene: BVU_0183: Polygalacturonase (EC 3.2.1.15) |
Polygalacturonase (EC 3.2.1.15) |
| BT4147 |
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Gene: BACDOR_00365: Conserved hypothetical protein |
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Gene: BACOVA_04947: Conserved hypothetical protein |
*
Bacteroides plebeius DSM 17135 Site: position = -96 score = 8.58625 sequence = TGTATGATAATCGA-(6)-TGTATAATAATCCA Gene: BACPLE_00253: Conserved hypothetical protein |
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Gene: BT4147: Conserved hypothetical protein |
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Gene: BVU_0184: Conserved hypothetical protein |
Conserved hypothetical protein |
| BVU_0185 |
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Gene: BACDOR_00364: Conserved hypothetical protein |
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Gene: BVU_0185: Conserved hypothetical protein |
Conserved hypothetical protein |
| pehX2 |
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Gene: BACDOR_00363: Predicted endopolygalacturonase |
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Gene: BACOVA_04946: Predicted endopolygalacturonase |
Gene: BACPLE_00254: Predicted endopolygalacturonase |
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Gene: BT4146: Predicted endopolygalacturonase |
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Gene: BVU_0186: Predicted endopolygalacturonase |
Predicted endopolygalacturonase |
| ramA |
Gene: BACCELL_01179: Predicted alpha-L-rhamnosidase |
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Gene: BACDOR_00362: Predicted alpha-L-rhamnosidase |
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Gene: BACOVA_04945: Predicted alpha-L-rhamnosidase |
*
Bacteroides plebeius DSM 17135 Site: position = -136 score = 8.04414 sequence = CGTACAAAAATCCA-(6)-TGTACATTCCTATA Gene: BACPLE_03595: Predicted alpha-L-rhamnosidase |
Gene: BACSTE_00370: Predicted alpha-L-rhamnosidase |
Gene: BT4145: Predicted alpha-L-rhamnosidase |
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Gene: BVU_0187: Predicted alpha-L-rhamnosidase |
Predicted alpha-L-rhamnosidase |
| BT2958 |
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*
Bacteroides dorei DSM 17855 Site: position = -85 score = 9.26695 sequence = TGGACGAATTTCCA-(6)-TGTATCTTATTCTA Gene: BACDOR_00405: Putative glycosil hydrolase, GH115 family |
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Bacteroides ovatus ATCC 8483 Site: position = -79 score = 8.70464 sequence = TGAACGAAATTCTA-(6)-TGTACATGATTCTA Gene: BACOVA_02777: Putative glycosil hydrolase, GH115 family |
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Gene: BT2958: Putative glycosil hydrolase, GH115 family |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -85 score = 9.26695 sequence = TGGACGAATTTCCA-(6)-TGTATCTTATTCTA Gene: BVU_0154: Putative glycosil hydrolase, GH115 family |
Putative glycosil hydrolase, GH115 family |
| pehX5 |
Gene: BACCELL_00873: Polygalacturonase (EC 3.2.1.15) |
|
2
Bacteroides dorei DSM 17855 Gene: BACDOR_00406: Polygalacturonase (EC 3.2.1.15) Gene: BACDOR_04630: Polygalacturonase (EC 3.2.1.15) |
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Gene: BACOVA_04954: Polygalacturonase (EC 3.2.1.15) |
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Gene: BT4155: Polygalacturonase (EC 3.2.1.15) |
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Gene: BVU_0153: Polygalacturonase (EC 3.2.1.15) |
Polygalacturonase (EC 3.2.1.15) |
| BT4175 |
Gene: BACCELL_03333: Predicted beta-galactosidase, PL11 family |
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Gene: BACDOR_00407: Predicted beta-galactosidase, PL11 family |
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*
Bacteroides ovatus ATCC 8483 Site: position = -93 score = 8.33037 sequence = TGATGATTTCTACA-(6)-TGTACAATATTCTA Gene: BACOVA_04974: Predicted beta-galactosidase, PL11 family |
Gene: BACPLE_00255: Predicted beta-galactosidase, PL11 family |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -183 score = 6.48899 sequence = TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA Gene: BT4175: Predicted beta-galactosidase, PL11 family |
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Gene: BVU_0152: Predicted beta-galactosidase, PL11 family |
Predicted beta-galactosidase, PL11 family |
| rhiN3 |
Gene: BACCELL_03332: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BACDOR_00408: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BACOVA_04975: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: BACPLE_00256: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BT4176: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BVU_0151: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| rhaU |
Gene: BACCELL_03331: L-rhamnose mutarotase |
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Gene: BACDOR_00409: L-rhamnose mutarotase |
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Gene: BACOVA_04976: L-rhamnose mutarotase |
Gene: BACPLE_03131: L-rhamnose mutarotase |
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Gene: BT4177: L-rhamnose mutarotase |
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Gene: BVU_0150: L-rhamnose mutarotase |
L-rhamnose mutarotase |
| HTCS_Rgu-2 |
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Gene: BACDOR_00410: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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3
Bacteroides ovatus ATCC 8483 Gene: BACOVA_04977: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family Gene: BACOVA_04993: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family Gene: BACOVA_05030: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
Gene: BACPLE_03129: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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*2
Bacteroides thetaiotaomicron VPI-5482 Gene: BT4178: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family Site: position = -253 score = 7.96651 sequence = TAAACAAATATTCT-(6)-GGAAGTTTTTTCCA Gene: BT4182: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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Gene: BVU_0149: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
| rhaH |
Gene: BACCELL_00088: Rhamnogalacturonyl hydrolase |
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*
Bacteroides dorei DSM 17855 Site: position = -108 score = 8.85777 sequence = TGAACGAATAAACA-(6)-TGAATGAATTTCTA Gene: BACDOR_00395: Rhamnogalacturonyl hydrolase |
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Gene: BACOVA_04972: Rhamnogalacturonyl hydrolase |
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Bacteroides plebeius DSM 17135 Site: position = -93 score = 8.93297 sequence = TGTACAAAAGCACA-(6)-TGTACGATATTCCA Gene: BACPLE_03132: Rhamnogalacturonyl hydrolase |
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Gene: BT4173: Rhamnogalacturonyl hydrolase |
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Bacteroides vulgatus ATCC 8482 Site: position = -108 score = 8.85777 sequence = TGAACGAATAAACA-(6)-TGAATGAATTTCTA Gene: BVU_0160: Rhamnogalacturonyl hydrolase |
Rhamnogalacturonyl hydrolase |
| BACPLE_03130 |
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Gene: BACPLE_03130: Hypothetical protein |
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Hypothetical protein |
| BVU_0180 |
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Gene: BACDOR_00369: Predicted arabinosidase, GH42 family |
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Bacteroides ovatus ATCC 8483 Site: position = -108 score = 8.73658 sequence = TGTACAAAACTACA-(6)-TGAAATATTGTCCA Gene: BACOVA_04951: Predicted arabinosidase, GH42 family |
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Gene: BVU_0180: Predicted arabinosidase, GH42 family |
Predicted arabinosidase, GH42 family |
| abnC |
Gene: BACCELL_03341: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Gene: BACDOR_00370: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Gene: BACOVA_04952: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
Gene: BACPLE_00252: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -128 score = 8.19823 sequence = TGTACGAAACTACA-(6)-TGATAATATCTCCA Gene: BT4152: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Gene: BVU_0179: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
| BACOVA_04953 |
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Gene: BACOVA_04953: Hypothetical protein |
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Hypothetical protein |
| pehX4 |
Gene: BACCELL_03743: Polygalacturonase (EC 3.2.1.15 ) |
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Gene: BACDOR_03324: Polygalacturonase (EC 3.2.1.15 ) |
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Gene: BACOVA_05002: Polygalacturonase (EC 3.2.1.15 ) |
*
Bacteroides plebeius DSM 17135 Site: position = -150 score = 8.68569 sequence = TGTACAAAAAGACA-(6)-TGCATGATTCTCTA Gene: BACPLE_03588: Polygalacturonase (EC 3.2.1.15 ) |
Gene: BACSTE_00201: Polygalacturonase (EC 3.2.1.15 ) |
Gene: BT4153: Polygalacturonase (EC 3.2.1.15 ) |
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Gene: BVU_1767: Polygalacturonase (EC 3.2.1.15 ) |
Polygalacturonase (EC 3.2.1.15 ) |
| BT4154 |
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Gene: BACDOR_00389: Putative deacytylase |
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Gene: BT4154: Putative deacytylase |
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Putative deacytylase |
| BT4156 |
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*
Bacteroides dorei DSM 17855 Site: position = -69 score = 9.16267 sequence = TGTATCATTTTTCA-(6)-TGTATGATTTTCCA Gene: BACDOR_03323: Beta-galactosidase, GH2 family |
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Gene: BACPLE_03593: Beta-galactosidase, GH2 family |
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Gene: BT4156: Beta-galactosidase, GH2 family |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -69 score = 9.16267 sequence = TGTATCATTTTTCA-(6)-TGTATGATTTTCCA Gene: BVU_1768: Beta-galactosidase, GH2 family |
Beta-galactosidase, GH2 family |
| BT4172 |
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Gene: BACDOR_00396: Conserved hypothetical protein |
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*
Bacteroides ovatus ATCC 8483 Site: position = -89 score = 8.72866 sequence = TGAACGAATCGCCA-(6)-TGGATAATATTCTA Gene: BACOVA_04967: Conserved hypothetical protein |
*
Bacteroides plebeius DSM 17135 Site: position = -92 score = 9.73141 sequence = TATACAAATTTACA-(6)-TGTACAATACTCCA Gene: BACPLE_00251: Conserved hypothetical protein |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -123 score = 9.63801 sequence = TGAACAAATATCCA-(6)-TGAATGATATTCTA Gene: BT4172: Conserved hypothetical protein |
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Gene: BVU_0159: Conserved hypothetical protein |
Conserved hypothetical protein |
| BACOVA_05029 |
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*
Bacteroides ovatus ATCC 8483 Site: position = -113 score = 7.04886 sequence = TGGAAAAAATGACA-(6)-TGGATAATAATCCT Gene: BACOVA_05029: Hypothetical protein |
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Hypothetical protein |
| rhiN2 |
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*
Bacteroides dorei DSM 17855 Site: position = -91 score = 8.74526 sequence = TGCATAATATTCAA-(6)-TGTACACATTTCCA Gene: BACDOR_00371: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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*
Bacteroides ovatus ATCC 8483 Site: position = -115 score = 8.43768 sequence = TGAACGAATTTAAA-(6)-TGCACGGAAATCCA Gene: BACOVA_04973: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -117 score = 9.20123 sequence = TGGACAAATTTAAA-(6)-TGGACAATATTCCA Gene: BT4174: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -94 score = 8.74526 sequence = TGCATAATATTCAA-(6)-TGTACACATTTCCA Gene: BVU_0178: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| BT4181 |
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Gene: BACOVA_04992: Beta-galactosidase, GH2 family |
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Gene: BT4181: Beta-galactosidase, GH2 family |
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Beta-galactosidase, GH2 family |
| CRON 4. | ||||||||||||
| susC_Ara-3 |
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*
Bacteroides dorei DSM 17855 Site: position = -118 score = 7.70349 sequence = TAGAGTATTCAACA-(6)-TGTACAATAATCCA Gene: BACDOR_01719: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
Gene: BACEGG_01540: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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Gene: BACPLE_00643: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -91 score = 7.70349 sequence = TAGAGTATTCAACA-(6)-TGTACAATAATCCA Gene: BVU_1005: TonB-dependent outer membrane transporter of arabinan oligosaccharides |
TonB-dependent outer membrane transporter of arabinan oligosaccharides |
| susD_Ara-3 |
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Gene: BACDOR_01720: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
Gene: BACEGG_01539: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BACPLE_00644: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
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Gene: BVU_1006: Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
Outer membrane polysaccharide binding protein for arabinan oligosaccharides |
| BVU_1007 |
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Gene: BACDOR_01721: Conserved hypothetical protein |
Gene: BACEGG_01538: Conserved hypothetical protein |
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Gene: BACPLE_00645: Conserved hypothetical protein |
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Gene: BVU_1007: Conserved hypothetical protein |
Conserved hypothetical protein |
| BVU_1008 |
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Gene: BACDOR_01722: Putative endo-arabinanase |
Gene: BACEGG_01537: Putative endo-arabinanase |
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Gene: BACPLE_00646: Putative endo-arabinanase |
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Gene: BVU_1008: Putative endo-arabinanase |
Putative endo-arabinanase |
| CRON 5. | ||||||||||||
| BT4163 |
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*
Bacteroides ovatus ATCC 8483 Site: position = -235 score = 7.16697 sequence = TGAATCAGAATACA-(6)-TGTACAGTAATTAA Gene: BACOVA_02709: Conserved hypothetical protein |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -263 score = 7.15491 sequence = GGCGGTATTTTCCA-(6)-TGTACGATTCTTCA Gene: BT4163: Conserved hypothetical protein |
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Conserved hypothetical protein |
| susC_Rgu-3 |
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Gene: BACOVA_02708: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
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Gene: BT4164: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
|
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
| susC_Rgu-3 |
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Gene: BACOVA_02707: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
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Gene: BT4165: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
|
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
| BT4166 |
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Gene: BACOVA_02706: Conserved hypothetical protein |
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Gene: BT4166: Conserved hypothetical protein |
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Conserved hypothetical protein |
| BT4167 |
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Gene: BACOVA_02705: Conserved hypothetical protein |
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Gene: BT4167: Conserved hypothetical protein |
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Conserved hypothetical protein |
| susC_Rgu-4 |
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Gene: BACOVA_02704: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
|
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Gene: BT4168: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
|
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides |
| susD_Rgu-4 |
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Gene: BACOVA_02703: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
|
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Gene: BT4169: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
| pelL1 |
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Gene: BT4170: Pectate lyase L (EC 4.2.2.2) |
|
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Pectate lyase L (EC 4.2.2.2) |
| BT4171 |
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Gene: BT4171: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |