Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhiN3 gene

Properties
Regulog: HTCS_Rgu-2 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Bacteroidetes
Built upon 39 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacteroides dorei DSM 17855
Position: -85
Score: 9.26695
Sequence: TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Locus tag: BACDOR_00405
Name: BT2958
Funciton: Putative glycosil hydrolase, GH115 family
Locus tag: BACDOR_00406
Name: pehX5
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACDOR_00407
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BACDOR_00408
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACDOR_00409
Name: rhaU
Funciton: L-rhamnose mutarotase
Locus tag: BACDOR_00410
Name: HTCS_Rgu-2
Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
BT2958-pehX5-BT4175-rhiN3-rhaU-HTCS_Rgu-2 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA BACDOR_00405
Bacteroides ovatus ATCC 8483
Position: -93
Score: 8.33037
Sequence: TGATGATTTCTACA-(6)-TGTACAATATTCTA
Locus tag: BACOVA_04974
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BACOVA_04975
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACOVA_04976
Name: rhaU
Funciton: L-rhamnose mutarotase
Locus tag: BACOVA_04977
Name: HTCS_Rgu-2
Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
BT4175-rhiN3-rhaU-HTCS_Rgu-2 -93 8.3 TGATGATTTCTACA-(6)-TGTACAATATTCTA BACOVA_04974
Bacteroides plebeius DSM 17135
Position: -96
Score: 8.58625
Sequence: TGTATGATAATCGA-(6)-TGTATAATAATCCA
Locus tag: BACPLE_00253
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BACPLE_00254
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BACPLE_00255
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BACPLE_00256
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
BT4147-pehX2-BT4175-rhiN3 -96 8.6 TGTATGATAATCGA-(6)-TGTATAATAATCCA BACPLE_00253
Bacteroides thetaiotaomicron VPI-5482
Position: -183
Score: 6.48899
Sequence: TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA
Locus tag: BT4175
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BT4176
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BT4177
Name: rhaU
Funciton: L-rhamnose mutarotase
Locus tag: BT4178
Name: HTCS_Rgu-2
Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
BT4175-rhiN3-rhaU-HTCS_Rgu-2 -183 6.5 TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA BT4175
Bacteroides vulgatus ATCC 8482
Position: -85
Score: 9.26695
Sequence: TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Locus tag: BVU_0154
Name: BT2958
Funciton: Putative glycosil hydrolase, GH115 family
Locus tag: BVU_0153
Name: pehX5
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BVU_0152
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BVU_0151
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BVU_0150
Name: rhaU
Funciton: L-rhamnose mutarotase
Locus tag: BVU_0149
Name: HTCS_Rgu-2
Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
BT2958-pehX5-BT4175-rhiN3-rhaU-HTCS_Rgu-2 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA BVU_0154