Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HTCS_Rgu-2 in Bacteroides dorei DSM 17855

Properties
Regulator type: Transcription factor
TF locus tag: BACDOR_00410
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Regulog: HTCS_Rgu-2 - Bacteroidaceae
Statistics of regulated genes:
- Genes 28
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -118
Score: 7.7
Sequence: TAGAGTATTCAACA-(6)-TGTACAATAATCCA
Locus tag: BACDOR_01719
Name: susC_Ara-3
Funciton: TonB-dependent outer membrane transporter of arabinan oligosaccharides
Locus tag: BACDOR_01720
Name: susD_Ara-3
Funciton: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
Locus tag: BACDOR_01721
Name: BVU_1007
Funciton: Conserved hypothetical protein
Locus tag: BACDOR_01722
Name: BVU_1008
Funciton: Putative endo-arabinanase
BACDOR_01719
susC_Ara-3
TonB-dependent outer membrane transporter of arabinan oligosaccharides
BACDOR_01720
susD_Ara-3
Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BACDOR_01721
BVU_1007
Conserved hypothetical protein
BACDOR_01722
BVU_1008
Putative endo-arabinanase
Position: -69
Score: 9.2
Sequence: TGTATCATTTTTCA-(6)-TGTATGATTTTCCA
Locus tag: BACDOR_03323
Name: BT4156
Funciton: Beta-galactosidase, GH2 family
Locus tag: BACDOR_03324
Name: pehX4
Funciton: Polygalacturonase (EC 3.2.1.15 )
BACDOR_03323
BT4156
Beta-galactosidase, GH2 family
BACDOR_03324
pehX4
Polygalacturonase (EC 3.2.1.15 )
Position: -94
Score: 9.3
Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Locus tag: BACDOR_00368
Name: bguA
Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BACDOR_00367
Name: rghT
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BACDOR_00366
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACDOR_00365
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BACDOR_00364
Name: BVU_0185
Funciton: Conserved hypothetical protein
Locus tag: BACDOR_00363
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BACDOR_00362
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
BACDOR_00368
bguA
Beta-glucuronidase (EC 3.2.1.31)
BACDOR_00367
rghT
Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
BACDOR_00366
pehX3
Polygalacturonase (EC 3.2.1.15)
BACDOR_00365
BT4147
Conserved hypothetical protein
BACDOR_00364
BVU_0185
Conserved hypothetical protein
BACDOR_00363
pehX2
Predicted endopolygalacturonase
BACDOR_00362
ramA
Predicted alpha-L-rhamnosidase
Position: -85
Score: 9.3
Sequence: TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Locus tag: BACDOR_00405
Name: BT2958
Funciton: Putative glycosil hydrolase, GH115 family
Locus tag: BACDOR_00406
Name: pehX5
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACDOR_00407
Name: BT4175
Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BACDOR_00408
Name: rhiN3
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACDOR_00409
Name: rhaU
Funciton: L-rhamnose mutarotase
Locus tag: BACDOR_00410
Name: HTCS_Rgu-2
Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
BACDOR_00405
BT2958
Putative glycosil hydrolase, GH115 family
BACDOR_00406
pehX5
Polygalacturonase (EC 3.2.1.15)
BACDOR_00407
BT4175
Predicted beta-galactosidase, PL11 family
BACDOR_00408
rhiN3
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
BACDOR_00409
rhaU
L-rhamnose mutarotase
BACDOR_00410
HTCS_Rgu-2
Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
Position: -108
Score: 8.9
Sequence: TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Locus tag: BACDOR_00395
Name: rhaH
Funciton: Rhamnogalacturonyl hydrolase
Locus tag: BACDOR_00396
Name: BT4172
Funciton: Conserved hypothetical protein
BACDOR_00395
rhaH
Rhamnogalacturonyl hydrolase
BACDOR_00396
BT4172
Conserved hypothetical protein
Position: -88
Score: 9.6
Sequence: TGAACAATATTCCA-(6)-TGAATAAAATTCCA
Locus tag: BACDOR_00375
Name: ramA
Funciton: Alfa-L-rhamnosidase (EC 3.2.1.40)
Locus tag: BACDOR_00374
Name: BVU_0175
Funciton: Predicted methylesterase
Locus tag: BACDOR_00373
Name: rgaE2
Funciton: Rhamnogalacturonan endolyase
Locus tag: BACDOR_00372
Name: BVU_0177
Funciton: Predicted alpha-L-rhamnosidase, GH28 family
BACDOR_00375
ramA
Alfa-L-rhamnosidase (EC 3.2.1.40)
BACDOR_00374
BVU_0175
Predicted methylesterase
BACDOR_00373
rgaE2
Rhamnogalacturonan endolyase
BACDOR_00372
BVU_0177
Predicted alpha-L-rhamnosidase, GH28 family
Position: -87
Score: 9
Sequence: TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Locus tag: BACDOR_00393
Name: BT2680
Funciton: Beta-galactosidase (EC 3.2.1.23)
Locus tag: BACDOR_00394
Name: BVU_0161
Funciton: Predicted beta-galactosidase, PL11 family
BACDOR_00393
BT2680
Beta-galactosidase (EC 3.2.1.23)
BACDOR_00394
BVU_0161
Predicted beta-galactosidase, PL11 family
Position: -91
Score: 8.7
Sequence: TGCATAATATTCAA-(6)-TGTACACATTTCCA
Locus tag: BACDOR_00371
Name: rhiN2
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
BACDOR_00371
rhiN2
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise