Regulon of HTCS_Rgu-2 in Bacteroides thetaiotaomicron VPI-5482
| Regulator type: | Transcription factor |
| TF locus tag: | BT4182, BT4178 |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | |
| Regulog: | HTCS_Rgu-2 - Bacteroidaceae |
| Statistics of regulated genes: | |
| - Genes | 30 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By pathway - Rhamnogalacturonides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -263
Score: 7.2 Sequence: GGCGGTATTTTCCA-(6)-TGTACGATTCTTCA
Locus tag: BT4163
Name: BT4163 Funciton: Conserved hypothetical protein
Locus tag: BT4164
Name: susC_Rgu-3 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BT4165
Name: susC_Rgu-3 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
Locus tag: BT4166
Name: BT4166 Funciton: Conserved hypothetical protein
Locus tag: BT4167
Name: BT4167 Funciton: Conserved hypothetical protein
Locus tag: BT4168
Name: susC_Rgu-4 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BT4169
Name: susD_Rgu-4 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
Locus tag: BT4170
Name: pelL1 Funciton: Pectate lyase L (EC 4.2.2.2)
Locus tag: BT4171
Name: BT4171 Funciton: Hypothetical protein |
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BT4163
|
Conserved hypothetical protein
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susC_Rgu-3
|
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
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susC_Rgu-3
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
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BT4166
|
Conserved hypothetical protein
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BT4167
|
Conserved hypothetical protein
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susC_Rgu-4
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
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susD_Rgu-4
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
|
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pelL1
|
Pectate lyase L (EC 4.2.2.2)
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BT4171
|
Hypothetical protein
|
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Position: -183
Score: 6.5 Sequence: TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA
Locus tag: BT4175
Name: BT4175 Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BT4176
Name: rhiN3 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BT4177
Name: rhaU Funciton: L-rhamnose mutarotase
Locus tag: BT4178
Name: HTCS_Rgu-2 Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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BT4175
|
Predicted beta-galactosidase, PL11 family
|
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rhiN3
|
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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rhaU
|
L-rhamnose mutarotase
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HTCS_Rgu-2
|
Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
|
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Position: -123
Score: 9.6 Sequence: TGAACAAATATCCA-(6)-TGAATGATATTCTA
Locus tag: BT4172
Name: BT4172 Funciton: Conserved hypothetical protein |
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BT4172
|
Conserved hypothetical protein
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Position: -111
Score: 8.5 Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA
Locus tag: BT4151
Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BT4150
Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BT4149
Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BT4148
Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BT4147
Name: BT4147 Funciton: Conserved hypothetical protein
Locus tag: BT4146
Name: pehX2 Funciton: Predicted endopolygalacturonase
Locus tag: BT4145
Name: ramA Funciton: Predicted alpha-L-rhamnosidase |
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bguA
|
Beta-glucuronidase (EC 3.2.1.31)
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rghT
|
Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
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pehX3
|
Polygalacturonase (EC 3.2.1.15)
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pehX3
|
Polygalacturonase (EC 3.2.1.15)
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BT4147
|
Conserved hypothetical protein
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pehX2
|
Predicted endopolygalacturonase
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ramA
|
Predicted alpha-L-rhamnosidase
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Position: -117
Score: 9.2 Sequence: TGGACAAATTTAAA-(6)-TGGACAATATTCCA
Locus tag: BT4174
Name: rhiN2 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BT4173
Name: rhaH Funciton: Rhamnogalacturonyl hydrolase |
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rhiN2
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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rhaH
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Rhamnogalacturonyl hydrolase
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Position: -253
Score: 8 Sequence: TAAACAAATATTCT-(6)-GGAAGTTTTTTCCA
Locus tag: BT4182
Name: HTCS_Rgu-2 Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
Locus tag: BT4181
Name: BT4181 Funciton: Beta-galactosidase, GH2 family |
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HTCS_Rgu-2
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Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
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BT4181
|
Beta-galactosidase, GH2 family
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Position: -128
Score: 8.2 Sequence: TGTACGAAACTACA-(6)-TGATAATATCTCCA
Locus tag: BT4152
Name: abnC Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Locus tag: BT4153
Name: pehX4 Funciton: Polygalacturonase (EC 3.2.1.15 )
Locus tag: BT4154
Name: BT4154 Funciton: Putative deacytylase
Locus tag: BT4155
Name: pehX5 Funciton: Polygalacturonase (EC 3.2.1.15) |
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abnC
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
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pehX4
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Polygalacturonase (EC 3.2.1.15 )
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BT4154
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Putative deacytylase
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pehX5
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Polygalacturonase (EC 3.2.1.15)
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Position: -111
Score: 7.5 Sequence: GATTCATTTTTAAA-(6)-TGAACAAATCTCTA
Locus tag: BT2680
Name: BT2680 Funciton: Beta-galactosidase (EC 3.2.1.23) |
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BT2680
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Beta-galactosidase (EC 3.2.1.23)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |