Regulon of HTCS_Rgu-2 in Bacteroides ovatus ATCC 8483
| Regulator type: | Transcription factor |
| TF locus tag: | BACOVA_04993, BACOVA_04977, BACOVA_05030 |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | |
| Regulog: | HTCS_Rgu-2 - Bacteroidaceae |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By pathway - Rhamnogalacturonides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -79
Score: 8.7 Sequence: TGAACGAAATTCTA-(6)-TGTACATGATTCTA
Locus tag: BACOVA_02777
Name: BT2958 Funciton: Putative glycosil hydrolase, GH115 family |
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BT2958
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Putative glycosil hydrolase, GH115 family
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Position: -235
Score: 7.2 Sequence: TGAATCAGAATACA-(6)-TGTACAGTAATTAA
Locus tag: BACOVA_02709
Name: BT4163 Funciton: Conserved hypothetical protein
Locus tag: BACOVA_02708
Name: susC_Rgu-3 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BACOVA_02707
Name: susC_Rgu-3 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
Locus tag: BACOVA_02706
Name: BT4166 Funciton: Conserved hypothetical protein
Locus tag: BACOVA_02705
Name: BT4167 Funciton: Conserved hypothetical protein
Locus tag: BACOVA_02704
Name: susC_Rgu-4 Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BACOVA_02703
Name: susD_Rgu-4 Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides |
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BT4163
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Conserved hypothetical protein
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susC_Rgu-3
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
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susC_Rgu-3
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
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BT4166
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Conserved hypothetical protein
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BT4167
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Conserved hypothetical protein
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susC_Rgu-4
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TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
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susD_Rgu-4
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Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
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Position: -93
Score: 8.3 Sequence: TGATGATTTCTACA-(6)-TGTACAATATTCTA
Locus tag: BACOVA_04974
Name: BT4175 Funciton: Predicted beta-galactosidase, PL11 family
Locus tag: BACOVA_04975
Name: rhiN3 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACOVA_04976
Name: rhaU Funciton: L-rhamnose mutarotase
Locus tag: BACOVA_04977
Name: HTCS_Rgu-2 Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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BT4175
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Predicted beta-galactosidase, PL11 family
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rhiN3
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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rhaU
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L-rhamnose mutarotase
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HTCS_Rgu-2
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Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
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Position: -89
Score: 8.7 Sequence: TGAACGAATCGCCA-(6)-TGGATAATATTCTA
Locus tag: BACOVA_04967
Name: BT4172 Funciton: Conserved hypothetical protein |
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BT4172
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Conserved hypothetical protein
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Position: -108
Score: 8.7 Sequence: TGTACAAAACTACA-(6)-TGAAATATTGTCCA
Locus tag: BACOVA_04951
Name: BVU_0180 Funciton: Predicted arabinosidase, GH42 family
Locus tag: BACOVA_04952
Name: abnC Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Locus tag: BACOVA_04953
Name: BACOVA_04953 Funciton: Hypothetical protein
Locus tag: BACOVA_04954
Name: pehX5 Funciton: Polygalacturonase (EC 3.2.1.15) |
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BVU_0180
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Predicted arabinosidase, GH42 family
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abnC
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
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BACOVA_04953
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Hypothetical protein
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pehX5
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Polygalacturonase (EC 3.2.1.15)
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Position: -113
Score: 7 Sequence: TGGAAAAAATGACA-(6)-TGGATAATAATCCT
Locus tag: BACOVA_05029
Name: BACOVA_05029 Funciton: Hypothetical protein
Locus tag: BACOVA_05030
Name: HTCS_Rgu-2 Funciton: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family |
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BACOVA_05029
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Hypothetical protein
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HTCS_Rgu-2
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Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
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Position: -115
Score: 8.4 Sequence: TGAACGAATTTAAA-(6)-TGCACGGAAATCCA
Locus tag: BACOVA_04973
Name: rhiN2 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACOVA_04972
Name: rhaH Funciton: Rhamnogalacturonyl hydrolase |
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rhiN2
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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rhaH
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Rhamnogalacturonyl hydrolase
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Position: -141
Score: 8.2 Sequence: TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
Position: -83
Score: 8.5 Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA
Locus tag: BACOVA_04950
Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BACOVA_04949
Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BACOVA_04948
Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACOVA_04947
Name: BT4147 Funciton: Conserved hypothetical protein
Locus tag: BACOVA_04946
Name: pehX2 Funciton: Predicted endopolygalacturonase
Locus tag: BACOVA_04945
Name: ramA Funciton: Predicted alpha-L-rhamnosidase |
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bguA
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Beta-glucuronidase (EC 3.2.1.31)
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rghT
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Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
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pehX3
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Polygalacturonase (EC 3.2.1.15)
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BT4147
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Conserved hypothetical protein
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pehX2
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Predicted endopolygalacturonase
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ramA
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Predicted alpha-L-rhamnosidase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |