Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ramA gene

Properties
Regulog: HTCS_Rgu-2 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Bacteroidetes
Built upon 39 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacteroides dorei DSM 17855
Position: -94
Score: 9.29039
Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Locus tag: BACDOR_00368
Name: bguA
Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BACDOR_00367
Name: rghT
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BACDOR_00366
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACDOR_00365
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BACDOR_00364
Name: BVU_0185
Funciton: Conserved hypothetical protein
Locus tag: BACDOR_00363
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BACDOR_00362
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-BVU_0185-pehX2-ramA -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA BACDOR_00368
Bacteroides ovatus ATCC 8483
Position: -141
Score: 8.19596
Sequence: TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
Position: -83
Score: 8.54903
Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA
Locus tag: BACOVA_04950
Name: bguA
Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BACOVA_04949
Name: rghT
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BACOVA_04948
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BACOVA_04947
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BACOVA_04946
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BACOVA_04945
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-pehX2-ramA -141 8.2 TGGACAATATTTCA-(6)-TGTAGTTTTGTACA BACOVA_04950
-83 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135
Position: -136
Score: 8.04414
Sequence: CGTACAAAAATCCA-(6)-TGTACATTCCTATA
Locus tag: BACPLE_03595
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
ramA -136 8 CGTACAAAAATCCA-(6)-TGTACATTCCTATA BACPLE_03595
Bacteroides thetaiotaomicron VPI-5482
Position: -111
Score: 8.54903
Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA
Locus tag: BT4151
Name: bguA
Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BT4150
Name: rghT
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BT4149
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BT4148
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BT4147
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BT4146
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BT4145
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-pehX3-BT4147-pehX2-ramA -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA BT4151
Bacteroides vulgatus ATCC 8482
Position: -94
Score: 9.29039
Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Locus tag: BVU_0181
Name: bguA
Funciton: Beta-glucuronidase (EC 3.2.1.31)
Locus tag: BVU_0182
Name: rghT
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BVU_0183
Name: pehX3
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: BVU_0184
Name: BT4147
Funciton: Conserved hypothetical protein
Locus tag: BVU_0185
Name: BVU_0185
Funciton: Conserved hypothetical protein
Locus tag: BVU_0186
Name: pehX2
Funciton: Predicted endopolygalacturonase
Locus tag: BVU_0187
Name: ramA
Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-BVU_0185-pehX2-ramA -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA BVU_0181