Regulog LgoR - Bacteroidaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	L-galactose utilization
Effector:	L-galactose
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Bacteroidaceae
By TF family - LacI
By effector - L-galactose
By pathway - L-galactose utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	6	3
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855	6	2
Bacteroides eggerthii DSM 20697	4	1
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483	6	2
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482	7	3
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
lgoD	* Bacteroides cellulosilyticus DSM 14838 Site: position = -101 score = 6.41576 sequence = TACGTAAACCATTACGTA Gene: BACCELL_03921: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Bacteroides coprophilus DSM 18228	* Bacteroides dorei DSM 17855 Site: position = -102 score = 6.29859 sequence = TACGCAAAGGTTTACGTA Gene: BACDOR_00330: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	* Bacteroides eggerthii DSM 20697 Site: position = -94 score = 6.02629 sequence = TACGTAAACCATTACGTG Gene: BACEGG_00150: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -100 score = 6.1505 sequence = TACGTAAACCGTTACGTT Gene: BACOVA_03412: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Bacteroides plebeius DSM 17135 Gene: BACPLE_01543: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -101 score = 6.45768 sequence = TACGTAAACCGTTACGTA Gene: BT3614: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -102 score = 6.29859 sequence = TACGCAAAGGTTTACGTA Gene: BVU_0219: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent	L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent
lgoL	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03922: L-galactono-1,5-lactone lactonase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00329: L-galactono-1,5-lactone lactonase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00149: L-galactono-1,5-lactone lactonase	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03413: L-galactono-1,5-lactone lactonase	Bacteroides plebeius DSM 17135 Gene: BACPLE_01542: L-galactono-1,5-lactone lactonase	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3615: L-galactono-1,5-lactone lactonase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0220: L-galactono-1,5-lactone lactonase	L-galactono-1,5-lactone lactonase
lgoP	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03923: Predicted L-galactose permease, FucP family	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00328: Predicted L-galactose permease, FucP family	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00148: Predicted L-galactose permease, FucP family	Bacteroides fragilis NCTC 9343	2 Bacteroides ovatus ATCC 8483 Gene: BACOVA_03415: Predicted L-galactose permease, FucP family Gene: BACOVA_03414: Predicted L-galactose permease, FucP family	Bacteroides plebeius DSM 17135 Gene: BACPLE_01541: Predicted L-galactose permease, FucP family	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3616: Predicted L-galactose permease, FucP family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0221: Predicted L-galactose permease, FucP family	Predicted L-galactose permease, FucP family
lgaD	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_03924: L-galactonate dehydrogenase	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00327: L-galactonate dehydrogenase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00147: L-galactonate dehydrogenase	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03416: L-galactonate dehydrogenase	Bacteroides plebeius DSM 17135 Gene: BACPLE_01540: L-galactonate dehydrogenase	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT3617: L-galactonate dehydrogenase	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0222: L-galactonate dehydrogenase	L-galactonate dehydrogenase

CRON 2.
GH43	* Bacteroides cellulosilyticus DSM 14838 Site: position = -148 score = 6.61647 sequence = TACGTAAAGGTTTACGTA Gene: BACCELL_03654: Glycosyl hydrolase family 43	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00059: Glycosyl hydrolase family 43	* Bacteroides dorei DSM 17855 Site: position = -113 score = 5.59124 sequence = TACGCAAAGGTTTGCGTG Gene: BACDOR_00441: Glycosyl hydrolase family 43	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_00231: Glycosyl hydrolase family 43	Bacteroides plebeius DSM 17135 Gene: BACPLE_00107: Glycosyl hydrolase family 43	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -157 score = 6.02629 sequence = TACGTAAAGCATTACGTG Gene: BT4159: Glycosyl hydrolase family 43	Bacteroides uniformis ATCC 8492	* Bacteroides vulgatus ATCC 8482 Site: position = -306 score = 5.90911 sequence = TACGCAAAGGTTTACGTG Gene: BVU_0122: Glycosyl hydrolase family 43	Glycosyl hydrolase family 43
GH28	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_02799: Endopygalactorunase, Glycosyl hydrolase family 28	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_00442: Endopygalactorunase, Glycosyl hydrolase family 28	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483 Gene: BACOVA_05611: Endopygalactorunase, Glycosyl hydrolase family 28	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0121: Endopygalactorunase, Glycosyl hydrolase family 28	Endopygalactorunase, Glycosyl hydrolase family 28
GH35	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_00065: Glycosyl hydrolase family 35	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_02247: Glycosyl hydrolase family 35	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4160: Glycosyl hydrolase family 35	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Glycosyl hydrolase family 35

CRON 3.
lgoR	* Bacteroides cellulosilyticus DSM 14838 Site: position = -98 score = 6.41576 sequence = TACGTAATGGTTTACGTA Gene: BACCELL_03920: Predicted transcriptional regulator for L-galactose utilization, LacI family	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_04896: Predicted transcriptional regulator for L-galactose utilization, LacI family	Bacteroides eggerthii DSM 20697 Gene: BACEGG_01377: Predicted transcriptional regulator for L-galactose utilization, LacI family	Bacteroides fragilis NCTC 9343	* Bacteroides ovatus ATCC 8483 Site: position = -97 score = 6.1505 sequence = AACGTAACGGTTTACGTA Gene: BACOVA_03411: Predicted transcriptional regulator for L-galactose utilization, LacI family	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -96 score = 6.45768 sequence = TACGTAACGGTTTACGTA Gene: BT3613: Predicted transcriptional regulator for L-galactose utilization, LacI family	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_0845: Predicted transcriptional regulator for L-galactose utilization, LacI family	Predicted transcriptional regulator for L-galactose utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LgoR - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --