Regulog LgoR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | L-galactose utilization |
| Effector: | L-galactose |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - LacI
- By effector - L-galactose
- By pathway - L-galactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 6 | 3 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 6 | 2 |
| Bacteroides eggerthii DSM 20697 | 4 | 1 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 6 | 2 |
| Bacteroides plebeius DSM 17135 | ||
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 7 | 3 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 6 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| lgoD |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -101 score = 6.41576 sequence = TACGTAAACCATTACGTA Gene: BACCELL_03921: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
|
*
Bacteroides dorei DSM 17855 Site: position = -102 score = 6.29859 sequence = TACGCAAAGGTTTACGTA Gene: BACDOR_00330: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
*
Bacteroides eggerthii DSM 20697 Site: position = -94 score = 6.02629 sequence = TACGTAAACCATTACGTG Gene: BACEGG_00150: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -100 score = 6.1505 sequence = TACGTAAACCGTTACGTT Gene: BACOVA_03412: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
Gene: BACPLE_01543: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
|
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -101 score = 6.45768 sequence = TACGTAAACCGTTACGTA Gene: BT3614: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
|
*
Bacteroides vulgatus ATCC 8482 Site: position = -102 score = 6.29859 sequence = TACGCAAAGGTTTACGTA Gene: BVU_0219: L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
L-galactose dehydrogenase (EC 1.1.1.316), NAD-dependent |
| lgoL |
Gene: BACCELL_03922: L-galactono-1,5-lactone lactonase |
|
Gene: BACDOR_00329: L-galactono-1,5-lactone lactonase |
Gene: BACEGG_00149: L-galactono-1,5-lactone lactonase |
|
Gene: BACOVA_03413: L-galactono-1,5-lactone lactonase |
Gene: BACPLE_01542: L-galactono-1,5-lactone lactonase |
|
Gene: BT3615: L-galactono-1,5-lactone lactonase |
|
Gene: BVU_0220: L-galactono-1,5-lactone lactonase |
L-galactono-1,5-lactone lactonase |
| lgoP |
Gene: BACCELL_03923: Predicted L-galactose permease, FucP family |
|
Gene: BACDOR_00328: Predicted L-galactose permease, FucP family |
Gene: BACEGG_00148: Predicted L-galactose permease, FucP family |
|
2
Bacteroides ovatus ATCC 8483 Gene: BACOVA_03415: Predicted L-galactose permease, FucP family Gene: BACOVA_03414: Predicted L-galactose permease, FucP family |
Gene: BACPLE_01541: Predicted L-galactose permease, FucP family |
|
Gene: BT3616: Predicted L-galactose permease, FucP family |
|
Gene: BVU_0221: Predicted L-galactose permease, FucP family |
Predicted L-galactose permease, FucP family |
| lgaD |
Gene: BACCELL_03924: L-galactonate dehydrogenase |
|
Gene: BACDOR_00327: L-galactonate dehydrogenase |
Gene: BACEGG_00147: L-galactonate dehydrogenase |
|
Gene: BACOVA_03416: L-galactonate dehydrogenase |
Gene: BACPLE_01540: L-galactonate dehydrogenase |
|
Gene: BT3617: L-galactonate dehydrogenase |
|
Gene: BVU_0222: L-galactonate dehydrogenase |
L-galactonate dehydrogenase |
| CRON 2. | ||||||||||||
| GH43 |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -148 score = 6.61647 sequence = TACGTAAAGGTTTACGTA Gene: BACCELL_03654: Glycosyl hydrolase family 43 |
Gene: BACCOPRO_00059: Glycosyl hydrolase family 43 |
*
Bacteroides dorei DSM 17855 Site: position = -113 score = 5.59124 sequence = TACGCAAAGGTTTGCGTG Gene: BACDOR_00441: Glycosyl hydrolase family 43 |
|
|
Gene: BACOVA_00231: Glycosyl hydrolase family 43 |
Gene: BACPLE_00107: Glycosyl hydrolase family 43 |
|
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -157 score = 6.02629 sequence = TACGTAAAGCATTACGTG Gene: BT4159: Glycosyl hydrolase family 43 |
|
*
Bacteroides vulgatus ATCC 8482 Site: position = -306 score = 5.90911 sequence = TACGCAAAGGTTTACGTG Gene: BVU_0122: Glycosyl hydrolase family 43 |
Glycosyl hydrolase family 43 |
| GH28 |
Gene: BACCELL_02799: Endopygalactorunase, Glycosyl hydrolase family 28 |
|
Gene: BACDOR_00442: Endopygalactorunase, Glycosyl hydrolase family 28 |
|
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Gene: BACOVA_05611: Endopygalactorunase, Glycosyl hydrolase family 28 |
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Gene: BVU_0121: Endopygalactorunase, Glycosyl hydrolase family 28 |
Endopygalactorunase, Glycosyl hydrolase family 28 |
| GH35 |
Gene: BACCELL_00065: Glycosyl hydrolase family 35 |
Gene: BACCOPRO_02247: Glycosyl hydrolase family 35 |
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Gene: BT4160: Glycosyl hydrolase family 35 |
|
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Glycosyl hydrolase family 35 |
| CRON 3. | ||||||||||||
| lgoR |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -98 score = 6.41576 sequence = TACGTAATGGTTTACGTA Gene: BACCELL_03920: Predicted transcriptional regulator for L-galactose utilization, LacI family |
|
Gene: BACDOR_04896: Predicted transcriptional regulator for L-galactose utilization, LacI family |
Gene: BACEGG_01377: Predicted transcriptional regulator for L-galactose utilization, LacI family |
|
*
Bacteroides ovatus ATCC 8483 Site: position = -97 score = 6.1505 sequence = AACGTAACGGTTTACGTA Gene: BACOVA_03411: Predicted transcriptional regulator for L-galactose utilization, LacI family |
|
|
*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -96 score = 6.45768 sequence = TACGTAACGGTTTACGTA Gene: BT3613: Predicted transcriptional regulator for L-galactose utilization, LacI family |
|
Gene: BVU_0845: Predicted transcriptional regulator for L-galactose utilization, LacI family |
Predicted transcriptional regulator for L-galactose utilization, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |