Propagation of HTCS_Rgu-1 regulog to Bacteroides cellulosilyticus DSM 14838
| Source regulog: | HTCS_Rgu-1 - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides |
| Phylum: | Bacteroidetes |
| Propagated regulon: | |
| Target genome | Bacteroides cellulosilyticus DSM 14838 |
| Orthologous TF(s) | BACCELL_03130, BACCELL_01917, BACCELL_01416, BACCELL_03652 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -106
Score: 9.3 Sequence: TAAATAATGCAC-(9)-CGAAAAGTACAC
Locus tag: BACCELL_03119
|
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| BACCELL_03119 | -106 | 9.3 | TAAATAATGCAC-(9)-CGAAAAGTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiN | ||||
| Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03119 | -106 | 9.3 | TAAATAATGCAC-(9)-CGAAAAGTACAC |
| Bacteroides dorei DSM 17855 | BACDOR_03278 | -105 | 9.4 | CAAATAATACAC-(9)-TGAAAAGTGCAC |
| Bacteroides eggerthii DSM 20697 | BACEGG_00863 | -107 | 9.7 | CAAAAAATGCAC-(9)-CAAAAAATGCAC |
| Bacteroides ovatus ATCC 8483 | BACOVA_04900 | -155 | 8.9 | CAAAAAATGCAC-(9)-TAAAAAATCCCA |
| Bacteroides plebeius DSM 17135 | BACPLE_03451 | -108 | 7.7 | CAATTTTTATAC-(9)-TGAAAACTACAC |
| Bacteroides stercoris ATCC 43183 | BACSTE_03304 | -107 | 9.8 | CAAAAAATGCAC-(9)-CAAAAAGTGCAC |
| Bacteroides thetaiotaomicron VPI-5482 | BT4108 | -105 | 9.1 | CAAAAAATACAC-(9)-TAAAAAATCCCA |
| Bacteroides vulgatus ATCC 8482 | BVU_1797 | -105 | 9.4 | CAAATAATACAC-(9)-TGAAAAGTGCAC |
|
Position: -126
Score: 9 Sequence: CAAAAAATACCA-(9)-CAGATATTACAC
Locus tag: BACCELL_03135
|
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| BACCELL_03135 | -126 | 9 | CAAAAAATACCA-(9)-CAGATATTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: susC_Rgu-1 | ||||
| Ortholog function: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03135 | -126 | 9 | CAAAAAATACCA-(9)-CAGATATTACAC |
| Bacteroides eggerthii DSM 20697 | BACEGG_00870 | -127 | 9.3 | CAAAAAGTACCA-(9)-CAAAAATTACAC |
| Bacteroides thetaiotaomicron VPI-5482 | BT4114 | -127 | 9.4 | CAAAAAATACTA-(9)-CAAATATTACAC |
|
Position: -273
Score: 8.8 Sequence: CAAAAAATCCAC-(9)-CAAATTGTGCAC
Locus tag: BACCELL_03143
|
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| BACCELL_03143 | -273 | 8.8 | CAAAAAATCCAC-(9)-CAAATTGTGCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pehX1 | ||||
| Ortholog function: Polygalacturonase (EC 3.2.1.15 ) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03143 | -273 | 8.8 | CAAAAAATCCAC-(9)-CAAATTGTGCAC |
| Bacteroides eggerthii DSM 20697 | BACEGG_00876 | -272 | 9.2 | CAAAAAATACAC-(9)-CAATTAGTACAC |
| Bacteroides ovatus ATCC 8483 | BACOVA_05040 | -267 | 9 | CAAAAAATACAC-(9)-CAATTAGTCCAC |
| Bacteroides stercoris ATCC 43183 | BACSTE_03276 | -205 | 8.4 | CAAAAAATACAC-(9)-CAATTTGTACAC |
| Bacteroides thetaiotaomicron VPI-5482 | BT4187 | -265 | 9 | CAAAAAATACAC-(9)-CAATAACTCCAC |