Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HTCS_Rgu-1 regulog to Bacteroides cellulosilyticus DSM 14838

Reference regulog properties
Source regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides cellulosilyticus DSM 14838
Orthologous TF(s) BACCELL_03130, BACCELL_01917, BACCELL_01416, BACCELL_03652
Regulated genes 3
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacteroides cellulosilyticus DSM 14838
Locus tag Position Score Sequence
Position: -106
Score: 9.3
Sequence: TAAATAATGCAC-(9)-CGAAAAGTACAC
Locus tag: BACCELL_03119
BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Bacteroides dorei DSM 17855 BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00863 -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC
Bacteroides ovatus ATCC 8483 BACOVA_04900 -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA
Bacteroides plebeius DSM 17135 BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Bacteroides stercoris ATCC 43183 BACSTE_03304 -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Bacteroides vulgatus ATCC 8482 BVU_1797 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Position: -126
Score: 9
Sequence: CAAAAAATACCA-(9)-CAGATATTACAC
Locus tag: BACCELL_03135
BACCELL_03135 -126 9 CAAAAAATACCA-(9)-CAGATATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Rgu-1
Ortholog function: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Bacteroides cellulosilyticus DSM 14838 BACCELL_03135 -126 9 CAAAAAATACCA-(9)-CAGATATTACAC
Bacteroides eggerthii DSM 20697 BACEGG_00870 -127 9.3 CAAAAAGTACCA-(9)-CAAAAATTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4114 -127 9.4 CAAAAAATACTA-(9)-CAAATATTACAC
Position: -273
Score: 8.8
Sequence: CAAAAAATCCAC-(9)-CAAATTGTGCAC
Locus tag: BACCELL_03143
BACCELL_03143 -273 8.8 CAAAAAATCCAC-(9)-CAAATTGTGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX1
Ortholog function: Polygalacturonase (EC 3.2.1.15 )
Bacteroides cellulosilyticus DSM 14838 BACCELL_03143 -273 8.8 CAAAAAATCCAC-(9)-CAAATTGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00876 -272 9.2 CAAAAAATACAC-(9)-CAATTAGTACAC
Bacteroides ovatus ATCC 8483 BACOVA_05040 -267 9 CAAAAAATACAC-(9)-CAATTAGTCCAC
Bacteroides stercoris ATCC 43183 BACSTE_03276 -205 8.4 CAAAAAATACAC-(9)-CAATTTGTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4187 -265 9 CAAAAAATACAC-(9)-CAATAACTCCAC
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