Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Bacteroides uniformis ATCC 8492

Reference regulog properties
Source regulog: Crp - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process:
Effector:
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides uniformis ATCC 8492
Orthologous TF(s) BACUNI_04721
Regulated genes 12
Built upon 113 sites [see more]
Predicted regulatory interactions in Bacteroides uniformis ATCC 8492
Locus tag Position Score Sequence
Position: -75
Score: 6.2
Sequence: TTTTATGTTATTTAGCATAAAT
Locus tag: BACUNI_00649
BACUNI_00649 -75 6.2 TTTTATGTTATTTAGCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serB
Ortholog function: Phosphoserine phosphatase (EC 3.1.3.3)
Bacteroides cellulosilyticus DSM 14838 BACCELL_04825 -163 5.5 TTTCATGTTATATAACATGTTT
Bacteroides coprophilus DSM 18228 BACCOPRO_01694 -134 5.6 AATTATGCTTTTAAACATAAAT
Bacteroides dorei DSM 17855 BACDOR_02848 -116 6.1 AAATATGTTATATAGCATAAAA
Bacteroides eggerthii DSM 20697 BACEGG_02676 -74 6.3 TTTTATGTTATTTAGCATAAAA
Bacteroides fragilis NCTC 9343 BF2389 -71 6.2 TTTTATGTTATTTAGCATAAAT
Bacteroides ovatus ATCC 8483 BACOVA_02567 -66 6.3 TTTTATGTTATTTAGCATAAAA
Bacteroides stercoris ATCC 43183 BACSTE_01424 -74 6.3 TTTTATGTTATTTAGCATAAAA
Bacteroides thetaiotaomicron VPI-5482 BT0832 -67 6.3 TTTTATGTTATTTAGCATAAAA
Bacteroides uniformis ATCC 8492 BACUNI_00649 -75 6.2 TTTTATGTTATTTAGCATAAAT
Bacteroides vulgatus ATCC 8482 BVU_3158 -116 6.1 AAATATGTTATATAGCATAAAA
Position: -92
Score: 4.1
Sequence: AATAATGCTTTATAATATTATA
Position: -7
Score: 4.4
Sequence: ATATATTATGCAAAACATAGAA
Locus tag: BACUNI_00695
BACUNI_00695 -92 4.1 AATAATGCTTTATAATATTATA
-7 4.4 ATATATTATGCAAAACATAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Predicted regulator of xylose utilization, NrtR family
Bacteroides cellulosilyticus DSM 14838 BACCELL_04758 -83 4.9 AATAGTGCTTTATAACATAATA
Bacteroides dorei DSM 17855 BACDOR_00865 -34 4.8 AATAGTGTTTTAGAACATAATA
Bacteroides eggerthii DSM 20697 BACEGG_02642 -92 4.8 AATAATGCTTTGTAACATATCA
Bacteroides fragilis NCTC 9343 BF2354 -81 4.6 AACAATGCTTTATAGCATATTA
Bacteroides ovatus ATCC 8483 BACOVA_02532 -80 4.2 AACAATGTTTTATAGCATGTTT
Bacteroides stercoris ATCC 43183 BACSTE_01380 -92 4.3 AATAATGCTTTATAACATTGTA
Bacteroides thetaiotaomicron VPI-5482 BT0791 -81 4.2 AACAATGTTTTATAGCATGTCA
Bacteroides uniformis ATCC 8492 BACUNI_00695 -92 4.1 AATAATGCTTTATAATATTATA
Bacteroides vulgatus ATCC 8482 BVU_3955 -100 4.5 AATAGTGTTTTGGAACATAATA
Position: -26
Score: 5.1
Sequence: ACTTATGTTGTAAAATATATAT
Locus tag: BACUNI_01486
BACUNI_01486 -26 5.1 ACTTATGTTGTAAAATATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF00722
Ortholog function: Glycoside hydrolase, family 16
Bacteroides cellulosilyticus DSM 14838 BACCELL_03483 -225 5.4 TTCTATGTTCTATAACATGCAA
Bacteroides uniformis ATCC 8492 BACUNI_01486 -26 5.1 ACTTATGTTGTAAAATATATAT
Position: -225
Score: 5
Sequence: TTTTGTGTTATATAACATGTTG
Locus tag: BACUNI_01489
BACUNI_01489 -225 5 TTTTGTGTTATATAACATGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Crp-3
Ortholog function: TonB-dependent outer membrane transporter of oligosaccharides
Bacteroides cellulosilyticus DSM 14838 BACCELL_03480 -225 5.4 TTCTATGTTCTATAACATGCAA
Bacteroides uniformis ATCC 8492 BACUNI_01489 -225 5 TTTTGTGTTATATAACATGTTG
Position: -245
Score: 5
Sequence: CAGCATGTTATATAACATAAAC
Locus tag: BACUNI_01546
BACUNI_01546 -245 5 CAGCATGTTATATAACATAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupG
Ortholog function: Nucleoside permease NupG
Bacteroides eggerthii DSM 20697 BACEGG_01333 -193 5.8 GACTATGTTATATAACATAAAA
Bacteroides ovatus ATCC 8483 BACOVA_05132 -269 5.6 CATTATGTTGTATAACATAAAC
Bacteroides thetaiotaomicron VPI-5482 BT4330 -271 5.7 CATTATGTTCTATAACATAAAA
Bacteroides uniformis ATCC 8492 BACUNI_01546 -245 5 CAGCATGTTATATAACATAAAC
Position: -105
Score: 5.3
Sequence: TAACGTGTTGTATAACATAAAT
Locus tag: BACUNI_02281
BACUNI_02281 -105 5.3 TAACGTGTTGTATAACATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF09719
Ortholog function: Putative redox-active protein (C_GCAxxG_C_C)
Bacteroides cellulosilyticus DSM 14838 BACCELL_04404 -142 5.6 TTTTATGACATATAACATAAAA
-110 5.8 TAATGTGTTATATAACATAAAT
Bacteroides dorei DSM 17855 BACDOR_00927 -110 4.6 AAAAGTGTTGAATAACATAATT
Bacteroides eggerthii DSM 20697 BACEGG_02494 -109 5.6 TAACGTGTTATATAACATAAAA
Bacteroides fragilis NCTC 9343 BF2582 -99 5.9 TAATCTGTTATATAACATAATT
Bacteroides ovatus ATCC 8483 BACOVA_02257 -107 5.3 TAAAGTGTTATATAACATAAAA
Bacteroides stercoris ATCC 43183 BACSTE_01186 -110 5.4 TAACGTGCTATATAACATAAAA
Bacteroides uniformis ATCC 8492 BACUNI_02281 -105 5.3 TAACGTGTTGTATAACATAAAT
Bacteroides vulgatus ATCC 8482 BVU_3908 -104 4.6 AAAAGTGTTGAATAACATAATT
Position: -125
Score: 5.7
Sequence: TTTTGTGTTATAAAACATATAC
Locus tag: BACUNI_03316
BACUNI_03316 -125 5.7 TTTTGTGTTATAAAACATATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: BACCELL_00794
Ortholog function: hypothetical protein
Bacteroides cellulosilyticus DSM 14838 BACCELL_00794 -135 6.1 TTTTATGTTATAAAACATATTT
Bacteroides dorei DSM 17855 BACDOR_04003 -33 4.5 TTTTAGGTTTAACAAATTAAAA
Bacteroides eggerthii DSM 20697 BACEGG_00156 -129 5.5 TTTTGTGTTATAAAACATATTC
Bacteroides fragilis NCTC 9343 BF3646 -151 6 TTTTATGTTGAATAACATATTT
Bacteroides ovatus ATCC 8483 BACOVA_03166 -135 5.8 TTTTATGCTATAAAACATATTC
Bacteroides plebeius DSM 17135 BACPLE_00736 -116 5.5 TTTTATGTTATCCAACATATTC
Bacteroides stercoris ATCC 43183 BACSTE_03638 -132 5.7 TTTTGTGTTATAAAACATAATC
Bacteroides thetaiotaomicron VPI-5482 BT2178 -135 5.4 TTTTATGCTATAAAACATATCG
Bacteroides uniformis ATCC 8492 BACUNI_03316 -125 5.7 TTTTGTGTTATAAAACATATAC
Bacteroides vulgatus ATCC 8482 BVU_2553 -33 4.5 TTTTAGGTTTAACAAATTAAAA
Position: -91
Score: 5.5
Sequence: GTATATGTTACACAACATATAC
Locus tag: BACUNI_03327
BACUNI_03327 -91 5.5 GTATATGTTACACAACATATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylD
Ortholog function: Endo-1,4-beta-xylanase D
Bacteroides uniformis ATCC 8492 BACUNI_03327 -91 5.5 GTATATGTTACACAACATATAC
Position: -117
Score: 6.2
Sequence: TTTTATGCTGTTCAACATAAAA
Locus tag: BACUNI_04526
BACUNI_04526 -117 6.2 TTTTATGCTGTTCAACATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03929 -107 6 TTTTATGTCGTACAACATAAAA
Bacteroides eggerthii DSM 20697 BACEGG_01611 -4 6.1 TTTTATGTTCTTCAGCATAAAA
Bacteroides fragilis NCTC 9343 BF1323 -107 6.3 TTTTATGCTATTCAACATAAAA
Bacteroides ovatus ATCC 8483 BACOVA_05597 -113 6.1 TTTTATGTTGAAAAGCATAAAA
Bacteroides stercoris ATCC 43183 BACSTE_00806 -116 6.1 TTTTATGCTCTTCAACATAAAA
Bacteroides thetaiotaomicron VPI-5482 BT4738 -114 6.1 TTTTATGTTGAAAAGCATAAAA
Bacteroides uniformis ATCC 8492 BACUNI_04526 -117 6.2 TTTTATGCTGTTCAACATAAAA
Position: -33
Score: 4.7
Sequence: ATTTGTGCTGTATAACACAGTT
Locus tag: BACUNI_04721
BACUNI_04721 -33 4.7 ATTTGTGCTGTATAACACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: transcriptional regulator, Crp/Fnr family
Bacteroides cellulosilyticus DSM 14838 BACCELL_03476 -33 4.7 ATTTGTGCTGTATAACACAGTT
Bacteroides coprophilus DSM 18228 BACCOPRO_01276 -33 4.6 TTTTGTGCTTAATAACACGATT
Bacteroides dorei DSM 17855 BACDOR_01607 -35 4.1 ATTTGTGCTCTATAACACGGTT
Bacteroides eggerthii DSM 20697 BACEGG_01340 -33 4.6 ATTTGTGCTGTACAACACAGTT
Bacteroides fragilis NCTC 9343 BF0954 -33 4.6 ATTTGTGCTTTATAACACAGTT
Bacteroides ovatus ATCC 8483 BACOVA_05152 -33 4.8 TTTTGTGCTGTATAACACAGTT
Bacteroides plebeius DSM 17135 BACPLE_02167 -16 4.1 CTTTGTGCTTAATAACATGGTT
Bacteroides stercoris ATCC 43183 BACSTE_03515 -33 4.6 ATTTGTGCTGTACAACACAGTT
Bacteroides thetaiotaomicron VPI-5482 BT4338 -33 4.8 TTTTGTGCTGTATAACACAGTT
Bacteroides uniformis ATCC 8492 BACUNI_04721 -33 4.7 ATTTGTGCTGTATAACACAGTT
Bacteroides vulgatus ATCC 8482 BVU_3580 -35 4.1 ATTTGTGCTCTATAACACGGTT
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