Propagation of Crp regulog to Bacteroides uniformis ATCC 8492
| Source regulog: | Crp - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | |
| Effector: | |
| Phylum: | Bacteroidetes |
| Propagated regulon: | |
| Target genome | Bacteroides uniformis ATCC 8492 |
| Orthologous TF(s) | BACUNI_04721 |
| Regulated genes | 12 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -75
Score: 6.2 Sequence: TTTTATGTTATTTAGCATAAAT
Locus tag: BACUNI_00649
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| BACUNI_00649 | -75 | 6.2 | TTTTATGTTATTTAGCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serB | ||||
| Ortholog function: Phosphoserine phosphatase (EC 3.1.3.3) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04825 | -163 | 5.5 | TTTCATGTTATATAACATGTTT |
| Bacteroides coprophilus DSM 18228 | BACCOPRO_01694 | -134 | 5.6 | AATTATGCTTTTAAACATAAAT |
| Bacteroides dorei DSM 17855 | BACDOR_02848 | -116 | 6.1 | AAATATGTTATATAGCATAAAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_02676 | -74 | 6.3 | TTTTATGTTATTTAGCATAAAA |
| Bacteroides fragilis NCTC 9343 | BF2389 | -71 | 6.2 | TTTTATGTTATTTAGCATAAAT |
| Bacteroides ovatus ATCC 8483 | BACOVA_02567 | -66 | 6.3 | TTTTATGTTATTTAGCATAAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_01424 | -74 | 6.3 | TTTTATGTTATTTAGCATAAAA |
| Bacteroides thetaiotaomicron VPI-5482 | BT0832 | -67 | 6.3 | TTTTATGTTATTTAGCATAAAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_00649 | -75 | 6.2 | TTTTATGTTATTTAGCATAAAT |
| Bacteroides vulgatus ATCC 8482 | BVU_3158 | -116 | 6.1 | AAATATGTTATATAGCATAAAA |
|
Position: -92
Score: 4.1 Sequence: AATAATGCTTTATAATATTATA
Position: -7
Score: 4.4 Sequence: ATATATTATGCAAAACATAGAA
Locus tag: BACUNI_00695
|
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| BACUNI_00695 | -92 | 4.1 | AATAATGCTTTATAATATTATA | |
| -7 | 4.4 | ATATATTATGCAAAACATAGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylR | ||||
| Ortholog function: Predicted regulator of xylose utilization, NrtR family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04758 | -83 | 4.9 | AATAGTGCTTTATAACATAATA |
| Bacteroides dorei DSM 17855 | BACDOR_00865 | -34 | 4.8 | AATAGTGTTTTAGAACATAATA |
| Bacteroides eggerthii DSM 20697 | BACEGG_02642 | -92 | 4.8 | AATAATGCTTTGTAACATATCA |
| Bacteroides fragilis NCTC 9343 | BF2354 | -81 | 4.6 | AACAATGCTTTATAGCATATTA |
| Bacteroides ovatus ATCC 8483 | BACOVA_02532 | -80 | 4.2 | AACAATGTTTTATAGCATGTTT |
| Bacteroides stercoris ATCC 43183 | BACSTE_01380 | -92 | 4.3 | AATAATGCTTTATAACATTGTA |
| Bacteroides thetaiotaomicron VPI-5482 | BT0791 | -81 | 4.2 | AACAATGTTTTATAGCATGTCA |
| Bacteroides uniformis ATCC 8492 | BACUNI_00695 | -92 | 4.1 | AATAATGCTTTATAATATTATA |
| Bacteroides vulgatus ATCC 8482 | BVU_3955 | -100 | 4.5 | AATAGTGTTTTGGAACATAATA |
|
Position: -26
Score: 5.1 Sequence: ACTTATGTTGTAAAATATATAT
Locus tag: BACUNI_01486
|
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| BACUNI_01486 | -26 | 5.1 | ACTTATGTTGTAAAATATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: PF00722 | ||||
| Ortholog function: Glycoside hydrolase, family 16 | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03483 | -225 | 5.4 | TTCTATGTTCTATAACATGCAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_01486 | -26 | 5.1 | ACTTATGTTGTAAAATATATAT |
|
Position: -225
Score: 5 Sequence: TTTTGTGTTATATAACATGTTG
Locus tag: BACUNI_01489
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| BACUNI_01489 | -225 | 5 | TTTTGTGTTATATAACATGTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: susC_Crp-3 | ||||
| Ortholog function: TonB-dependent outer membrane transporter of oligosaccharides | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03480 | -225 | 5.4 | TTCTATGTTCTATAACATGCAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_01489 | -225 | 5 | TTTTGTGTTATATAACATGTTG |
|
Position: -245
Score: 5 Sequence: CAGCATGTTATATAACATAAAC
Locus tag: BACUNI_01546
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| BACUNI_01546 | -245 | 5 | CAGCATGTTATATAACATAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupG | ||||
| Ortholog function: Nucleoside permease NupG | ||||
| Bacteroides eggerthii DSM 20697 | BACEGG_01333 | -193 | 5.8 | GACTATGTTATATAACATAAAA |
| Bacteroides ovatus ATCC 8483 | BACOVA_05132 | -269 | 5.6 | CATTATGTTGTATAACATAAAC |
| Bacteroides thetaiotaomicron VPI-5482 | BT4330 | -271 | 5.7 | CATTATGTTCTATAACATAAAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_01546 | -245 | 5 | CAGCATGTTATATAACATAAAC |
|
Position: -105
Score: 5.3 Sequence: TAACGTGTTGTATAACATAAAT
Locus tag: BACUNI_02281
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| BACUNI_02281 | -105 | 5.3 | TAACGTGTTGTATAACATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: PF09719 | ||||
| Ortholog function: Putative redox-active protein (C_GCAxxG_C_C) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04404 | -142 | 5.6 | TTTTATGACATATAACATAAAA |
| -110 | 5.8 | TAATGTGTTATATAACATAAAT | ||
| Bacteroides dorei DSM 17855 | BACDOR_00927 | -110 | 4.6 | AAAAGTGTTGAATAACATAATT |
| Bacteroides eggerthii DSM 20697 | BACEGG_02494 | -109 | 5.6 | TAACGTGTTATATAACATAAAA |
| Bacteroides fragilis NCTC 9343 | BF2582 | -99 | 5.9 | TAATCTGTTATATAACATAATT |
| Bacteroides ovatus ATCC 8483 | BACOVA_02257 | -107 | 5.3 | TAAAGTGTTATATAACATAAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_01186 | -110 | 5.4 | TAACGTGCTATATAACATAAAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_02281 | -105 | 5.3 | TAACGTGTTGTATAACATAAAT |
| Bacteroides vulgatus ATCC 8482 | BVU_3908 | -104 | 4.6 | AAAAGTGTTGAATAACATAATT |
|
Position: -125
Score: 5.7 Sequence: TTTTGTGTTATAAAACATATAC
Locus tag: BACUNI_03316
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| BACUNI_03316 | -125 | 5.7 | TTTTGTGTTATAAAACATATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BACCELL_00794 | ||||
| Ortholog function: hypothetical protein | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_00794 | -135 | 6.1 | TTTTATGTTATAAAACATATTT |
| Bacteroides dorei DSM 17855 | BACDOR_04003 | -33 | 4.5 | TTTTAGGTTTAACAAATTAAAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_00156 | -129 | 5.5 | TTTTGTGTTATAAAACATATTC |
| Bacteroides fragilis NCTC 9343 | BF3646 | -151 | 6 | TTTTATGTTGAATAACATATTT |
| Bacteroides ovatus ATCC 8483 | BACOVA_03166 | -135 | 5.8 | TTTTATGCTATAAAACATATTC |
| Bacteroides plebeius DSM 17135 | BACPLE_00736 | -116 | 5.5 | TTTTATGTTATCCAACATATTC |
| Bacteroides stercoris ATCC 43183 | BACSTE_03638 | -132 | 5.7 | TTTTGTGTTATAAAACATAATC |
| Bacteroides thetaiotaomicron VPI-5482 | BT2178 | -135 | 5.4 | TTTTATGCTATAAAACATATCG |
| Bacteroides uniformis ATCC 8492 | BACUNI_03316 | -125 | 5.7 | TTTTGTGTTATAAAACATATAC |
| Bacteroides vulgatus ATCC 8482 | BVU_2553 | -33 | 4.5 | TTTTAGGTTTAACAAATTAAAA |
|
Position: -91
Score: 5.5 Sequence: GTATATGTTACACAACATATAC
Locus tag: BACUNI_03327
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| BACUNI_03327 | -91 | 5.5 | GTATATGTTACACAACATATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylD | ||||
| Ortholog function: Endo-1,4-beta-xylanase D | ||||
| Bacteroides uniformis ATCC 8492 | BACUNI_03327 | -91 | 5.5 | GTATATGTTACACAACATATAC |
|
Position: -117
Score: 6.2 Sequence: TTTTATGCTGTTCAACATAAAA
Locus tag: BACUNI_04526
|
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| BACUNI_04526 | -117 | 6.2 | TTTTATGCTGTTCAACATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflB | ||||
| Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54) | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03929 | -107 | 6 | TTTTATGTCGTACAACATAAAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_01611 | -4 | 6.1 | TTTTATGTTCTTCAGCATAAAA |
| Bacteroides fragilis NCTC 9343 | BF1323 | -107 | 6.3 | TTTTATGCTATTCAACATAAAA |
| Bacteroides ovatus ATCC 8483 | BACOVA_05597 | -113 | 6.1 | TTTTATGTTGAAAAGCATAAAA |
| Bacteroides stercoris ATCC 43183 | BACSTE_00806 | -116 | 6.1 | TTTTATGCTCTTCAACATAAAA |
| Bacteroides thetaiotaomicron VPI-5482 | BT4738 | -114 | 6.1 | TTTTATGTTGAAAAGCATAAAA |
| Bacteroides uniformis ATCC 8492 | BACUNI_04526 | -117 | 6.2 | TTTTATGCTGTTCAACATAAAA |
|
Position: -33
Score: 4.7 Sequence: ATTTGTGCTGTATAACACAGTT
Locus tag: BACUNI_04721
|
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| BACUNI_04721 | -33 | 4.7 | ATTTGTGCTGTATAACACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: transcriptional regulator, Crp/Fnr family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_03476 | -33 | 4.7 | ATTTGTGCTGTATAACACAGTT |
| Bacteroides coprophilus DSM 18228 | BACCOPRO_01276 | -33 | 4.6 | TTTTGTGCTTAATAACACGATT |
| Bacteroides dorei DSM 17855 | BACDOR_01607 | -35 | 4.1 | ATTTGTGCTCTATAACACGGTT |
| Bacteroides eggerthii DSM 20697 | BACEGG_01340 | -33 | 4.6 | ATTTGTGCTGTACAACACAGTT |
| Bacteroides fragilis NCTC 9343 | BF0954 | -33 | 4.6 | ATTTGTGCTTTATAACACAGTT |
| Bacteroides ovatus ATCC 8483 | BACOVA_05152 | -33 | 4.8 | TTTTGTGCTGTATAACACAGTT |
| Bacteroides plebeius DSM 17135 | BACPLE_02167 | -16 | 4.1 | CTTTGTGCTTAATAACATGGTT |
| Bacteroides stercoris ATCC 43183 | BACSTE_03515 | -33 | 4.6 | ATTTGTGCTGTACAACACAGTT |
| Bacteroides thetaiotaomicron VPI-5482 | BT4338 | -33 | 4.8 | TTTTGTGCTGTATAACACAGTT |
| Bacteroides uniformis ATCC 8492 | BACUNI_04721 | -33 | 4.7 | ATTTGTGCTGTATAACACAGTT |
| Bacteroides vulgatus ATCC 8482 | BVU_3580 | -35 | 4.1 | ATTTGTGCTCTATAACACGGTT |