Regulog HTCS_Hya - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Hyaluronan utilization; Chondroitin sulphate utilization |
| Effector: | Hyaluronan; Chondroitin sulphate |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Hyaluronan
- By effector - Chondroitin sulphate
- By pathway - Hyaluronan utilization
- By pathway - Chondroitin sulphate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 4 | 2 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | ||
| Bacteroides eggerthii DSM 20697 | 3 | 2 |
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 4 | 2 |
| Bacteroides plebeius DSM 17135 | 5 | 1 |
| Bacteroides stercoris ATCC 43183 | 6 | 3 |
| Bacteroides thetaiotaomicron VPI-5482 | 6 | 2 |
| Bacteroides uniformis ATCC 8492 | 2 | 1 |
| Bacteroides vulgatus ATCC 8482 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| susC_Nan-6 |
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Bacteroides stercoris ATCC 43183 Site: position = -137 score = 7.73414 sequence = TGTACAATATC-(10)-CGGACAATTAG Gene: BACSTE_02458: TonB-dependent outer membrane transporter of sialic acid oligomers |
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Bacteroides uniformis ATCC 8492 Site: position = -140 score = 8.32516 sequence = TGTACGAATTC-(10)-CGAACTATTAA Gene: BACUNI_01022: TonB-dependent outer membrane transporter of sialic acid oligomers |
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TonB-dependent outer membrane transporter of sialic acid oligomers |
| susD_Nan-6 |
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Gene: BACSTE_02457: Outer membrane polysaccharide binding protein for sialic acid oligomers |
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Gene: BACUNI_01023: Outer membrane polysaccharide binding protein for sialic acid oligomers |
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Outer membrane polysaccharide binding protein for sialic acid oligomers |
| CRON 2. | ||||||||||||
| susC_Hya-1 |
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Bacteroides cellulosilyticus DSM 14838 Site: position = -132 score = 8.26487 sequence = TGTACAAATTC-(10)-CGAACTATTAA Gene: BACCELL_01637: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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Bacteroides eggerthii DSM 20697 Site: position = -129 score = 7.68629 sequence = TGTACAAAATT-(10)-CGAACGATTAC Gene: BACEGG_03393: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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Bacteroides ovatus ATCC 8483 Site: position = -139 score = 8.64293 sequence = TGTATGATTTT-(10)-TGAATAATTCT Gene: BACOVA_01998: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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Bacteroides plebeius DSM 17135 Site: position = -86 score = 7.47189 sequence = TGAACTATTTT-(10)-TCTATAATAAA Gene: BACPLE_00367: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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Bacteroides stercoris ATCC 43183 Site: position = -94 score = 8.25811 sequence = TGTATGAATTT-(10)-TGGACAATTAC Gene: BACSTE_02277: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -140 score = 8.73138 sequence = TGTATTATTTT-(10)-TGAATAATTCT Gene: BT3332: TonB-dependent outer membrane transporter of hyaluronan oligomers |
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TonB-dependent outer membrane transporter of hyaluronan oligomers |
| susD_Hya-1 |
Gene: BACCELL_01638: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
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Gene: BACEGG_03392: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
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Gene: BACOVA_01999: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
Gene: BACPLE_00366: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
Gene: BACSTE_02278: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
Gene: BT3331: Outer membrane polysaccharide binding protein for hyaluronan oligomers |
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Outer membrane polysaccharide binding protein for hyaluronan oligomers |
| hyaG |
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Gene: BACOVA_02000: Endoglucanase (EC 3.2.1.4) |
Gene: BACPLE_00365: Endoglucanase (EC 3.2.1.4) |
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Gene: BT3330: Endoglucanase (EC 3.2.1.4) |
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Endoglucanase (EC 3.2.1.4) |
| hyaL |
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Gene: BACPLE_00364: Pectate lyase (EC 4.2.2.2) |
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Gene: BT3329: Pectate lyase (EC 4.2.2.2) |
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Pectate lyase (EC 4.2.2.2) |
| BACPLE_00363 |
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Gene: BACPLE_00363: Predicted envelope glycoprotein |
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Predicted envelope glycoprotein |
| hyaB |
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Gene: BT3328: Hyaluronate lyase (EC 4.2.2.19) |
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Hyaluronate lyase (EC 4.2.2.19) |
| csuB |
Gene: BACCELL_01639: Chondroitin sulfate ABC exolyase |
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Gene: BACEGG_03390: Chondroitin sulfate ABC exolyase |
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Gene: BACOVA_01967: Chondroitin sulfate ABC exolyase |
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Gene: BACSTE_02279: Chondroitin sulfate ABC exolyase |
Gene: BT3350: Chondroitin sulfate ABC exolyase |
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Chondroitin sulfate ABC exolyase |
| CRON 3. | ||||||||||||
| hyaS |
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Bacteroides cellulosilyticus DSM 14838 Site: position = -98 score = 8.1951 sequence = TGTACGTTTTT-(10)-TGTACTCTACT Gene: BACCELL_01636: Arylsulfatase C (EC 3.1.6.1) |
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Bacteroides eggerthii DSM 20697 Site: position = -98 score = 7.83483 sequence = TGGACTTTTCA-(10)-TGTACTATTCT Gene: BACEGG_03395: Arylsulfatase C (EC 3.1.6.1) |
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Bacteroides ovatus ATCC 8483 Site: position = -100 score = 8.62924 sequence = TGTACTATTTT-(10)-TGTACATTCCT Gene: BACOVA_01997: Arylsulfatase C (EC 3.1.6.1) |
Gene: BACPLE_00710: Arylsulfatase C (EC 3.1.6.1) |
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Bacteroides stercoris ATCC 43183 Site: position = -98 score = 7.95736 sequence = TGTACTTTTTA-(10)-TGTACTCTTTT Gene: BACSTE_02459: Arylsulfatase C (EC 3.1.6.1) |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -98 score = 8.28442 sequence = TGGACTATTTT-(10)-TGTACATTCCT Gene: BT3333: Arylsulfatase C (EC 3.1.6.1) |
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Arylsulfatase C (EC 3.1.6.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |