Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HTCS_Rgu-2 regulog to Bacteroides dorei DSM 17855

Reference regulog properties
Source regulog: HTCS_Rgu-2 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides dorei DSM 17855
Orthologous TF(s) BACDOR_03465, BACDOR_00410, BACDOR_03287
Regulated genes 7
Built upon 39 sites [see more]
Predicted regulatory interactions in Bacteroides dorei DSM 17855
Locus tag Position Score Sequence
Position: -94
Score: 9.3
Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Locus tag: BACDOR_00368
BACDOR_00368 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bguA
Ortholog function: Beta-glucuronidase (EC 3.2.1.31)
Bacteroides dorei DSM 17855 BACDOR_00368 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04950 -141 8.2 TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
-83 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135 BACPLE_00503 -96 8.5 TACACAATATTCCA-(6)-TGAAGAATTATCGA
Bacteroides thetaiotaomicron VPI-5482 BT4151 -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides vulgatus ATCC 8482 BVU_0181 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Position: -91
Score: 8.7
Sequence: TGCATAATATTCAA-(6)-TGTACACATTTCCA
Locus tag: BACDOR_00371
BACDOR_00371 -91 8.7 TGCATAATATTCAA-(6)-TGTACACATTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN2
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides dorei DSM 17855 BACDOR_00371 -91 8.7 TGCATAATATTCAA-(6)-TGTACACATTTCCA
Bacteroides vulgatus ATCC 8482 BVU_0178 -94 8.7 TGCATAATATTCAA-(6)-TGTACACATTTCCA
Position: -87
Score: 9
Sequence: TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Locus tag: BACDOR_00393
BACDOR_00393 -87 9 TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT2680
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Bacteroides dorei DSM 17855 BACDOR_00393 -87 9 TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Bacteroides thetaiotaomicron VPI-5482 BT2680 -111 7.5 GATTCATTTTTAAA-(6)-TGAACAAATCTCTA
Bacteroides vulgatus ATCC 8482 BVU_0162 -87 9 TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Position: -108
Score: 8.9
Sequence: TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Locus tag: BACDOR_00395
BACDOR_00395 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaH
Ortholog function: Rhamnogalacturonyl hydrolase
Bacteroides dorei DSM 17855 BACDOR_00395 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04972 -115 8.4 TGAACGAATTTAAA-(6)-TGCACGGAAATCCA
Bacteroides plebeius DSM 17135 BACPLE_03132 -93 8.9 TGTACAAAAGCACA-(6)-TGTACGATATTCCA
Bacteroides thetaiotaomicron VPI-5482 BT4173 -117 9.2 TGGACAAATTTAAA-(6)-TGGACAATATTCCA
Bacteroides vulgatus ATCC 8482 BVU_0160 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Position: -85
Score: 9.3
Sequence: TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Locus tag: BACDOR_00405
BACDOR_00405 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT2958
Ortholog function: Putative glycosil hydrolase, GH115 family
Bacteroides dorei DSM 17855 BACDOR_00405 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Bacteroides vulgatus ATCC 8482 BVU_0154 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Position: -118
Score: 7.7
Sequence: TAGAGTATTCAACA-(6)-TGTACAATAATCCA
Locus tag: BACDOR_01719
BACDOR_01719 -118 7.7 TAGAGTATTCAACA-(6)-TGTACAATAATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Ara-3
Ortholog function: TonB-dependent outer membrane transporter of arabinan oligosaccharides
Bacteroides dorei DSM 17855 BACDOR_01719 -118 7.7 TAGAGTATTCAACA-(6)-TGTACAATAATCCA
Bacteroides vulgatus ATCC 8482 BVU_1005 -91 7.7 TAGAGTATTCAACA-(6)-TGTACAATAATCCA
Position: -69
Score: 9.2
Sequence: TGTATCATTTTTCA-(6)-TGTATGATTTTCCA
Locus tag: BACDOR_03323
BACDOR_03323 -69 9.2 TGTATCATTTTTCA-(6)-TGTATGATTTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4156
Ortholog function: Beta-galactosidase, GH2 family
Bacteroides dorei DSM 17855 BACDOR_03323 -69 9.2 TGTATCATTTTTCA-(6)-TGTATGATTTTCCA
Bacteroides vulgatus ATCC 8482 BVU_1768 -69 9.2 TGTATCATTTTTCA-(6)-TGTATGATTTTCCA
© 2009-2020 RegPrecise