Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HTCS_Rgu-2 regulog to Bacteroides thetaiotaomicron VPI-5482

Reference regulog properties
Source regulog: HTCS_Rgu-2 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides thetaiotaomicron VPI-5482
Orthologous TF(s) BT4178, BT4182
Regulated genes 7
Built upon 39 sites [see more]
Predicted regulatory interactions in Bacteroides thetaiotaomicron VPI-5482
Locus tag Position Score Sequence
Position: -111
Score: 7.5
Sequence: GATTCATTTTTAAA-(6)-TGAACAAATCTCTA
Locus tag: BT2680
BT2680 -111 7.5 GATTCATTTTTAAA-(6)-TGAACAAATCTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT2680
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Bacteroides dorei DSM 17855 BACDOR_00393 -87 9 TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Bacteroides thetaiotaomicron VPI-5482 BT2680 -111 7.5 GATTCATTTTTAAA-(6)-TGAACAAATCTCTA
Bacteroides vulgatus ATCC 8482 BVU_0162 -87 9 TGAACGAATTTCTA-(6)-TGTATCTTATTCTA
Position: -111
Score: 8.5
Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA
Locus tag: BT4151
BT4151 -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bguA
Ortholog function: Beta-glucuronidase (EC 3.2.1.31)
Bacteroides dorei DSM 17855 BACDOR_00368 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04950 -141 8.2 TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
-83 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135 BACPLE_00503 -96 8.5 TACACAATATTCCA-(6)-TGAAGAATTATCGA
Bacteroides thetaiotaomicron VPI-5482 BT4151 -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides vulgatus ATCC 8482 BVU_0181 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Position: -128
Score: 8.2
Sequence: TGTACGAAACTACA-(6)-TGATAATATCTCCA
Locus tag: BT4152
BT4152 -128 8.2 TGTACGAAACTACA-(6)-TGATAATATCTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnC
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Bacteroides ovatus ATCC 8483 BACOVA_04952 -108 8.7 TGTACAAAACTACA-(6)-TGAAATATTGTCCA
Bacteroides thetaiotaomicron VPI-5482 BT4152 -128 8.2 TGTACGAAACTACA-(6)-TGATAATATCTCCA
Position: -263
Score: 7.2
Sequence: GGCGGTATTTTCCA-(6)-TGTACGATTCTTCA
Locus tag: BT4163
BT4163 -263 7.2 GGCGGTATTTTCCA-(6)-TGTACGATTCTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4163
Ortholog function: Conserved hypothetical protein
Bacteroides ovatus ATCC 8483 BACOVA_02709 -235 7.2 TGAATCAGAATACA-(6)-TGTACAGTAATTAA
Bacteroides thetaiotaomicron VPI-5482 BT4163 -263 7.2 GGCGGTATTTTCCA-(6)-TGTACGATTCTTCA
Position: -123
Score: 9.6
Sequence: TGAACAAATATCCA-(6)-TGAATGATATTCTA
Locus tag: BT4172
BT4172 -123 9.6 TGAACAAATATCCA-(6)-TGAATGATATTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4172
Ortholog function: Conserved hypothetical protein
Bacteroides dorei DSM 17855 BACDOR_00396 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04967 -89 8.7 TGAACGAATCGCCA-(6)-TGGATAATATTCTA
Bacteroides plebeius DSM 17135 BACPLE_00251 -92 9.7 TATACAAATTTACA-(6)-TGTACAATACTCCA
Bacteroides thetaiotaomicron VPI-5482 BT4172 -123 9.6 TGAACAAATATCCA-(6)-TGAATGATATTCTA
Bacteroides vulgatus ATCC 8482 BVU_0159 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Position: -183
Score: 6.5
Sequence: TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA
Locus tag: BT4175
BT4175 -183 6.5 TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4175
Ortholog function: Predicted beta-galactosidase, PL11 family
Bacteroides dorei DSM 17855 BACDOR_00407 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04974 -93 8.3 TGATGATTTCTACA-(6)-TGTACAATATTCTA
Bacteroides thetaiotaomicron VPI-5482 BT4175 -183 6.5 TGGAATATTGTCCA-(6)-TTTAAATTTGTCCA
Bacteroides vulgatus ATCC 8482 BVU_0152 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
Position: -253
Score: 8
Sequence: TAAACAAATATTCT-(6)-GGAAGTTTTTTCCA
Locus tag: BT4182
BT4182 -253 8 TAAACAAATATTCT-(6)-GGAAGTTTTTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: HTCS_Rgu-2
Ortholog function: Rhamnogalacturonan utilization hybrid two-component system, HTH AraC family
Bacteroides thetaiotaomicron VPI-5482 BT4182 -253 8 TAAACAAATATTCT-(6)-GGAAGTTTTTTCCA
Bacteroides vulgatus ATCC 8482 BVU_0149 -85 9.3 TGGACGAATTTCCA-(6)-TGTATCTTATTCTA
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