Regulog SusR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | repressor |
| Biological process: | Starch utilization |
| Effector: | |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By pathway - Starch utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | ||
| Bacteroides coprophilus DSM 18228 | 4 | 1 |
| Bacteroides dorei DSM 17855 | 12 | 2 |
| Bacteroides eggerthii DSM 20697 | ||
| Bacteroides fragilis NCTC 9343 | ||
| Bacteroides ovatus ATCC 8483 | 6 | 2 |
| Bacteroides plebeius DSM 17135 | 5 | 2 |
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 7 | 2 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 4 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| susC |
2
Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05446: SusC, outer membrane protein involved in starch binding Gene: BACCELL_01427: SusC, outer membrane protein involved in starch binding |
Gene: BACCOPRO_01926: SusC, outer membrane protein involved in starch binding |
*4
Bacteroides dorei DSM 17855 Site: position = -193 score = 5.57646 sequence = CATTTATATTTTTT Site: position = -116 score = 5.77376 sequence = CATTTATATTTTTA Gene: BACDOR_02280: SusC, outer membrane protein involved in starch binding Gene: BACDOR_02279: SusC, outer membrane protein involved in starch binding Gene: BACDOR_02278: SusC, outer membrane protein involved in starch binding Gene: BACDOR_02284: SusC, outer membrane protein involved in starch binding |
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Gene: BACOVA_03518: SusC, outer membrane protein involved in starch binding |
Gene: BACPLE_02370: SusC, outer membrane protein involved in starch binding |
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Gene: BT3702: SusC, outer membrane protein involved in starch binding |
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Bacteroides vulgatus ATCC 8482 Site: position = -214 score = 5.30475 sequence = CTTTTATATTTTTA Gene: BVU_1380: SusC, outer membrane protein involved in starch binding |
SusC, outer membrane protein involved in starch binding |
| susD |
2
Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_05445: SusD, outer membrane protein Gene: BACCELL_01428: SusD, outer membrane protein |
Gene: BACCOPRO_01927: SusD, outer membrane protein |
2
Bacteroides dorei DSM 17855 Gene: BACDOR_02282: SusD, outer membrane protein Gene: BACDOR_02277: SusD, outer membrane protein |
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Gene: BACOVA_03517: SusD, outer membrane protein |
Gene: BACPLE_02369: SusD, outer membrane protein |
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Gene: BT3701: SusD, outer membrane protein |
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Gene: BVU_1379: SusD, outer membrane protein |
SusD, outer membrane protein |
| susE |
Gene: BACCELL_05444: Outer membrane protein SusE |
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Gene: BACDOR_02276: Outer membrane protein SusE |
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Gene: BACOVA_03516: Outer membrane protein SusE |
Gene: BACPLE_02368: Outer membrane protein SusE |
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Gene: BT3700: Outer membrane protein SusE |
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Outer membrane protein SusE |
| susF |
Gene: BACCELL_05443: Outer membrane protein SusF |
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Gene: BACDOR_02275: Outer membrane protein SusF |
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Gene: BACOVA_03515: Outer membrane protein SusF |
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Gene: BT3699: Outer membrane protein SusF |
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Outer membrane protein SusF |
| susG |
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Gene: BACDOR_02274: Alpha-amylase SusG (EC 3.2.1.1) |
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Gene: BT3698: Alpha-amylase SusG (EC 3.2.1.1) |
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Alpha-amylase SusG (EC 3.2.1.1) |
| susB |
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Gene: BACCOPRO_01925: Alpha-glucosidase SusB (EC 3.2.1.20) |
Gene: BACDOR_02285: Alpha-glucosidase SusB (EC 3.2.1.20) |
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*
Bacteroides ovatus ATCC 8483 Site: position = -184 score = 5.05251 sequence = GACTTATATTTATC Site: position = -117 score = 5.23892 sequence = AACTTGTATTTTTA Gene: BACOVA_03519: Alpha-glucosidase SusB (EC 3.2.1.20) |
*
Bacteroides plebeius DSM 17135 Site: position = -109 score = 5.24407 sequence = GATTTATATTTTCC Gene: BACPLE_02371: Alpha-glucosidase SusB (EC 3.2.1.20) |
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*
Bacteroides thetaiotaomicron VPI-5482 Site: position = -184 score = 5.10164 sequence = AACTTATATTTATC Site: position = -117 score = 5.23892 sequence = AACTTGTATTTTTA Gene: BT3703: Alpha-glucosidase SusB (EC 3.2.1.20) |
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Gene: BVU_1381: Alpha-glucosidase SusB (EC 3.2.1.20) |
Alpha-glucosidase SusB (EC 3.2.1.20) |
| susA |
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*
Bacteroides coprophilus DSM 18228 Site: position = -88 score = 5.58735 sequence = AATTTATATTTTTA Gene: BACCOPRO_01924: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
*
Bacteroides dorei DSM 17855 Site: position = -167 score = 5.18221 sequence = CGTTTATATTTTCA Site: position = -100 score = 5.77376 sequence = CATTTATATTTTTA Gene: BACDOR_02286: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
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*
Bacteroides ovatus ATCC 8483 Site: position = -163 score = 5.34975 sequence = CACTTGTATTTTTC Gene: BACOVA_03520: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
*
Bacteroides plebeius DSM 17135 Site: position = -148 score = 5.08284 sequence = CATTTATATTTTAG Site: position = -82 score = 4.8473 sequence = TATTTATATTTTAT Gene: BACPLE_02372: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -163 score = 5.34975 sequence = CACTTGTATTTTTC Site: position = -96 score = 5.35788 sequence = CATTTATATTTTCT Gene: BT3704: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
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Bacteroides vulgatus ATCC 8482 Site: position = -167 score = 5.18221 sequence = CGTTTATATTTTCA Site: position = -100 score = 5.77376 sequence = CATTTATATTTTTA Gene: BVU_1382: Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) |
| BACDOR_02283 |
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Gene: BACDOR_02283: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |