Regulog FucR - Bacteroidaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Fucose utilization |
| Effector: | Fucose |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - GntR/Others
- By effector - Fucose
- By pathway - Fucose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | 1 | 1 |
| Bacteroides coprophilus DSM 18228 | ||
| Bacteroides dorei DSM 17855 | 3 | 1 |
| Bacteroides eggerthii DSM 20697 | ||
| Bacteroides fragilis NCTC 9343 | 6 | 2 |
| Bacteroides ovatus ATCC 8483 | 6 | 1 |
| Bacteroides plebeius DSM 17135 | 5 | 1 |
| Bacteroides stercoris ATCC 43183 | ||
| Bacteroides thetaiotaomicron VPI-5482 | 6 | 1 |
| Bacteroides uniformis ATCC 8492 | ||
| Bacteroides vulgatus ATCC 8482 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| fucR |
*
Bacteroides cellulosilyticus DSM 14838 Site: position = -69 score = 6.32029 sequence = CTTTGCACCAGCACAGTTCAGCACAG Gene: BACCELL_04988: Transcriptional regulator of fucose utilization, GntR family |
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*
Bacteroides dorei DSM 17855 Site: position = -59 score = 6.20682 sequence = CTTTGCATCGGGACAGTTCAGCACAG Gene: BACDOR_02265: Transcriptional regulator of fucose utilization, GntR family |
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Bacteroides fragilis NCTC 9343 Site: position = -59 score = 5.98007 sequence = CTTTGTATCATGATAGTTCAGCATAG Gene: BF0210: Transcriptional regulator of fucose utilization, GntR family |
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Bacteroides ovatus ATCC 8483 Site: position = -45 score = 6.62787 sequence = CTTTGCATCAGCATAGTTCAGCATAG Gene: BACOVA_03849: Transcriptional regulator of fucose utilization, GntR family |
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Bacteroides plebeius DSM 17135 Site: position = -39 score = 5.83307 sequence = CTTTGTGTCAGGATAGTTCAGCACAG Gene: BACPLE_02898: Transcriptional regulator of fucose utilization, GntR family |
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Bacteroides thetaiotaomicron VPI-5482 Site: position = -45 score = 6.36123 sequence = CTTTGCAACAGCATAGCTCAGCACAG Gene: BT1272: Transcriptional regulator of fucose utilization, GntR family |
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*
Bacteroides vulgatus ATCC 8482 Site: position = -59 score = 6.20682 sequence = CTTTGCATCGGGACAGTTCAGCACAG Gene: BVU_1374: Transcriptional regulator of fucose utilization, GntR family |
Transcriptional regulator of fucose utilization, GntR family |
| fucI |
2
Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04986: L-fucose isomerase (EC 5.3.1.25) Gene: BACCELL_04985: L-fucose isomerase (EC 5.3.1.25) |
Gene: BACCOPRO_03383: L-fucose isomerase (EC 5.3.1.25) |
Gene: BACDOR_02264: L-fucose isomerase (EC 5.3.1.25) |
|
*
Bacteroides fragilis NCTC 9343 Site: position = -57 score = 5.05886 sequence = CTGTGTGTCAGCACAGGTCAGCATAG Gene: BF0211: L-fucose isomerase (EC 5.3.1.25) |
Gene: BACOVA_03850: L-fucose isomerase (EC 5.3.1.25) |
Gene: BACPLE_02897: L-fucose isomerase (EC 5.3.1.25) |
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Gene: BT1273: L-fucose isomerase (EC 5.3.1.25) |
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Gene: BVU_1373: L-fucose isomerase (EC 5.3.1.25) |
L-fucose isomerase (EC 5.3.1.25) |
| fucA |
Gene: BACCELL_04984: L-fuculose phosphate aldolase (EC 4.1.2.17) |
Gene: BACCOPRO_03381: L-fuculose phosphate aldolase (EC 4.1.2.17) |
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Gene: BF0213: L-fuculose phosphate aldolase (EC 4.1.2.17) |
Gene: BACOVA_03851: L-fuculose phosphate aldolase (EC 4.1.2.17) |
Gene: BACPLE_02896: L-fuculose phosphate aldolase (EC 4.1.2.17) |
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Gene: BT1274: L-fuculose phosphate aldolase (EC 4.1.2.17) |
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L-fuculose phosphate aldolase (EC 4.1.2.17) |
| fucK |
Gene: BACCELL_04983: L-fuculokinase (EC 2.7.1.51) |
Gene: BACCOPRO_03380: L-fuculokinase (EC 2.7.1.51) |
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Gene: BF0214: L-fuculokinase (EC 2.7.1.51) |
Gene: BACOVA_03852: L-fuculokinase (EC 2.7.1.51) |
Gene: BACPLE_02895: L-fuculokinase (EC 2.7.1.51) |
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Gene: BT1275: L-fuculokinase (EC 2.7.1.51) |
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L-fuculokinase (EC 2.7.1.51) |
| fucU |
Gene: BACCELL_04982: Possible alternative L-fucose mutarotase |
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Gene: BACOVA_03853: Possible alternative L-fucose mutarotase |
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Gene: BT1276: Possible alternative L-fucose mutarotase |
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Possible alternative L-fucose mutarotase |
| fucP |
Gene: BACCELL_04981: L-fucose permease |
Gene: BACCOPRO_03379: L-fucose permease |
Gene: BACDOR_02263: L-fucose permease |
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Gene: BF0215: L-fucose permease |
Gene: BACOVA_03854: L-fucose permease |
Gene: BACPLE_02894: L-fucose permease |
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Gene: BT1277: L-fucose permease |
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Gene: BVU_1372: L-fucose permease |
L-fucose permease |
| fucO |
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Gene: BACCOPRO_03382: Lactaldehyde reductase (EC 1.1.1.77) |
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Gene: BF0212: Lactaldehyde reductase (EC 1.1.1.77) |
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Lactaldehyde reductase (EC 1.1.1.77) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |