Propagation of NanR regulog to Bacteroides plebeius DSM 17135
| Source regulog: | NanR - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization; N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine; N-acetylneuraminic acid |
| Phylum: | Bacteroidetes |
| Propagated regulon: | |
| Target genome | Bacteroides plebeius DSM 17135 |
| Orthologous TF(s) | BACPLE_00597 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -267
Score: 5.2 Sequence: TATATAAATAATATTTTTATCAT
Position: -156
Score: 5 Sequence: TTCATAAAATATTTTATCAAATA
Locus tag: BACPLE_00590
|
||||
| BACPLE_00590 | -267 | 5.2 | TATATAAATAATATTTTTATCAT | |
| -156 | 5 | TTCATAAAATATTTTATCAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: susC_Nan-5 | ||||
| Ortholog function: TonB-dependent outer membrane transporter of sialic acid oligomers | ||||
| Bacteroides dorei DSM 17855 | BACDOR_01206 | -163 | 4.8 | GTTATAATAAAATATTTTTGTTT |
| -160 | 5 | ATAATAAAATATTTTTGTTTATA | ||
| Bacteroides fragilis NCTC 9343 | BF1719 | -39 | 5.3 | ATTATAATTTTCTTTATTATTAA |
| Bacteroides plebeius DSM 17135 | BACPLE_00590 | -267 | 5.2 | TATATAAATAATATTTTTATCAT |
| -156 | 5 | TTCATAAAATATTTTATCAAATA | ||
| Bacteroides vulgatus ATCC 8482 | BVU_2432 | -92 | 6.1 | TTTTTAATAAATTATTTTATTAA |
|
Position: -33
Score: 5 Sequence: TATTAAATAAACTAATTTATTAA
Position: -30
Score: 5.5 Sequence: TAAATAAACTAATTTATTAAATA
Position: -21
Score: 5.2 Sequence: TAATTTATTAAATATAATATTAT
Locus tag: BACPLE_00595
|
||||
| BACPLE_00595 | -33 | 5 | TATTAAATAAACTAATTTATTAA | |
| -30 | 5.5 | TAAATAAACTAATTTATTAAATA | ||
| -21 | 5.2 | TAATTTATTAAATATAATATTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanA | ||||
| Ortholog function: N-acetylneuraminate lyase (EC 4.1.3.3) | ||||
| Bacteroides coprophilus DSM 18228 | BACCOPRO_02518 | -30 | 5.8 | TAAATAAATAATTTTATTAAATA |
| Bacteroides dorei DSM 17855 | BACDOR_00694 | -111 | 5.5 | TTATTAATAAATAAATTTAGTTT |
| -40 | 4.8 | TAAGTAATATAAAATATTCATTT | ||
| Bacteroides eggerthii DSM 20697 | BACEGG_02294 | -85 | 6 | TTAATAAAATAATTTATTAAATA |
| Bacteroides fragilis NCTC 9343 | BF1712 | -150 | 6.3 | TTATTAATAAAATATTTTATTAT |
| -41 | 5.3 | ATATTAAAAATCTATATCATTAA | ||
| Bacteroides ovatus ATCC 8483 | BACOVA_00275 | -194 | 4.9 | AAAATAACTAAATATATTAAACT |
| Bacteroides stercoris ATCC 43183 | BACSTE_01905 | -94 | 5.8 | TATTTAATAAAATAAATTATTAA |
| Bacteroides vulgatus ATCC 8482 | BVU_4117 | -111 | 5.5 | TTATTAATAAATAAATTTAGTTT |
| -108 | 5.2 | TTAATAAATAAATTTAGTTTTTA | ||
| -40 | 4.8 | TAAGTAATATAAAATATTCATTT | ||
|
Position: -234
Score: 5.4 Sequence: TCATTAATAAATTATTATATTTA
Position: -132
Score: 4.7 Sequence: ACAATAAAACAAAGTATTAATTA
Position: -2
Score: 4.7 Sequence: TTATGAAAAAATTATTTTTGATT
Locus tag: BACPLE_00596
|
||||
| BACPLE_00596 | -234 | 5.4 | TCATTAATAAATTATTATATTTA | |
| -132 | 4.7 | ACAATAAAACAAAGTATTAATTA | ||
| -2 | 4.7 | TTATGAAAAAATTATTTTTGATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanM | ||||
| Ortholog function: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase | ||||
| Bacteroides dorei DSM 17855 | BACDOR_00669 | -47 | 4.8 | ATTTCAATAAAAACTTTTATTTT |
| Bacteroides fragilis NCTC 9343 | BF1812 | -91 | 5.6 | TATATAATAAAATATTTAATTAA |
| -88 | 6.1 | ATAATAAAATATTTAATTAATAT | ||
| -27 | 5.1 | ATATTAATAAATAATAGTATTGA | ||
| Bacteroides plebeius DSM 17135 | BACPLE_00596 | -234 | 5.4 | TCATTAATAAATTATTATATTTA |
|
Position: -88
Score: 5.4 Sequence: TAAATATAATAATTTATTAATGA
Locus tag: BACPLE_00597
|
||||
| BACPLE_00597 | -88 | 5.4 | TAAATATAATAATTTATTAATGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanR | ||||
| Ortholog function: Putative N-acetylglucosamine repressor of sialic acid catabolism, ROK family | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_04950 | -37 | 5.5 | ATATTAATAAAATTATTAAGTAT |
| Bacteroides dorei DSM 17855 | BACDOR_00695 | -217 | 5.5 | AAACTAAATTTATTTATTAATAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_02291 | -58 | 6.2 | TAATTAATAAATTATTTTATTAT |
| Bacteroides fragilis NCTC 9343 | BF1711 | -52 | 4.8 | TTAATAAACAAATTAACTATCTT |
| Bacteroides ovatus ATCC 8483 | BACOVA_01791 | -50 | 5.8 | TTAATAAAAAAATTAATTATCTT |
| Bacteroides plebeius DSM 17135 | BACPLE_00597 | -88 | 5.4 | TAAATATAATAATTTATTAATGA |
| Bacteroides stercoris ATCC 43183 | BACSTE_01902 | -242 | 6 | TATATAATAAATTATTTTATTAT |
| Bacteroides thetaiotaomicron VPI-5482 | BT0433 | -51 | 5.8 | TTAATAAAAAAATTAATTATCTT |
| Bacteroides uniformis ATCC 8492 | BACUNI_02075 | -52 | 5.1 | AATTTACAAAATTATTTTAGTAT |
| Bacteroides vulgatus ATCC 8482 | BVU_4116 | -190 | 5.5 | AAACTAAATTTATTTATTAATAA |
|
Position: -122
Score: 4.9 Sequence: TAAAAAATCTATTTTTTTATTTG
Locus tag: BACPLE_01828
|
||||
| BACPLE_01828 | -122 | 4.9 | TAAAAAATCTATTTTTTTATTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Bacteroides dorei DSM 17855 | BACDOR_00691 | -111 | 5.5 | TTATTAATAAATAAATTTAGTTT |
| -40 | 4.8 | TAAGTAATATAAAATATTCATTT | ||
| Bacteroides plebeius DSM 17135 | BACPLE_01828 | -122 | 4.9 | TAAAAAATCTATTTTTTTATTTG |
| Bacteroides vulgatus ATCC 8482 | BVU_4120 | -111 | 5.5 | TTATTAATAAATAAATTTAGTTT |
| -108 | 5.2 | TTAATAAATAAATTTAGTTTTTA | ||
| -40 | 4.8 | TAAGTAATATAAAATATTCATTT | ||
|
Position: -84
Score: 4.9 Sequence: CTGATAATAAATTTATATATTTA
Position: -81
Score: 5 Sequence: ATAATAAATTTATATATTTACAT
Locus tag: BACPLE_02962
|
||||
| BACPLE_02962 | -84 | 4.9 | CTGATAATAAATTTATATATTTA | |
| -81 | 5 | ATAATAAATTTATATATTTACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nahC | ||||
| Ortholog function: Beta-hexosaminidase (EC 3.2.1.52) | ||||
| Bacteroides dorei DSM 17855 | BACDOR_00670 | -47 | 4.8 | ATTTCAATAAAAACTTTTATTTT |
| Bacteroides fragilis NCTC 9343 | BF1813 | -91 | 5.6 | TATATAATAAAATATTTAATTAA |
| -88 | 6.1 | ATAATAAAATATTTAATTAATAT | ||
| -27 | 5.1 | ATATTAATAAATAATAGTATTGA | ||
| Bacteroides plebeius DSM 17135 | BACPLE_02962 | -81 | 5 | ATAATAAATTTATATATTTACAT |
|
Position: -43
Score: 4.8 Sequence: TTAACAAACTATTAATTAATTAA
Locus tag: BACPLE_03178
|
||||
| BACPLE_03178 | -43 | 4.8 | TTAACAAACTATTAATTAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exbB | ||||
| Ortholog function: Outer membrane transport system, transport protein ExbB | ||||
| Bacteroides cellulosilyticus DSM 14838 | BACCELL_01010 | -44 | 5.7 | ATAATAAACAAATTAATTAATTA |
| Bacteroides coprophilus DSM 18228 | BACCOPRO_02433 | -43 | 5 | TTTATAAACTATTAATTAATTAA |
| Bacteroides eggerthii DSM 20697 | BACEGG_00309 | -44 | 5.5 | ATAATAAGTAATTTAATTAATTA |
| Bacteroides fragilis NCTC 9343 | BF3530 | -43 | 5.5 | ATAATAATAATTTAATTAATTAA |
| Bacteroides ovatus ATCC 8483 | BACOVA_00648 | -39 | 4.8 | ATAATAATCAATTAATTAATCTT |
| Bacteroides stercoris ATCC 43183 | BACSTE_03148 | -44 | 5.5 | ATAATAAGTAATTTAATTAATTA |
| Bacteroides thetaiotaomicron VPI-5482 | BT2055 | -39 | 4.8 | ATAATAATCAATTAATTAATCTT |
| Bacteroides uniformis ATCC 8492 | BACUNI_01658 | -44 | 5.9 | ATAATAAATAAATTAATTAATTA |