Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Citrobacter koseri ATCC BAA-895

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 3 7
TF AlsR D-allose Allose utilization 2 3
TF AraC Arabinose Arabinose utilization 4 8
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 15 24
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 4 3
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 3 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 271 262
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF DeoR Deoxyribonucleoside utilization 5 2
TF ExuR Galacturonate Galacturonate utilization 8 8
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 11 12
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 97 69
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 30 22
TF FucR L-fuculose-1-phosphate Fucose utilization 5 5
TF Fur Iron ion, (Fe2+) Iron homeostasis 60 81
TF GalR/GalS Galactose Galactose utilization 7 10
TF GcvA Glycine Glycine metabolism 3 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 8 7
TF GntR Gluconate Gluconate utilization 4 6
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 6 4
TF HutC cis-Urocanic acid Histidine utilization 4 3
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IdnR L-idonate; 5-dehydro-D-gluconate Idonate utilization 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 20 19
TF LacI Allolactose Lactose utilization 1 1
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 1
TF LexA DNA damage SOS response 26 25
TF LfaR Sugar utilization 2 3
TF LldR L-lactate Lactate utilization 1 2
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MalI Maltose utilization 2 5
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 24 18
TF MetR Homocysteine Methionine biosynthesis 10 14
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 6 6
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 9 7
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 3 3
TF NadR NAD NAD biosynthesis 4 3
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 8 6
TF NanR N-acetylneuraminic acid Sialic acid utilization 2 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 34 28
TF NhaR Potassium ion Osmotic stress response 1 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 12 8
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 12 14
TF PdhR Pyruvate Pyruvate metabolism 6 5
TF PdxR2 Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 4
TF PdxR3 Pyridoxine biosynthesis 1 1
TF PhnF Phosphonate utilization 1 1
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 30 33
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 1
TF RcnR Nickel ion, (Ni2+); Cobalt ion, (Co2+) Cobalt resistance; Nickel resistance 2 4
TF RhaR Rhamnose Rhamnose utilization 2 1
TF RhaS Rhamnose Rhamnose utilization 8 4
TF RspR L-gulonate; D-mannonate L-gulonate utilization 3 2
TF RutR Uracil Pyrimidine utilization 2 1
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 3
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 4 4
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 3 4
TF SoxR Paraquat Superoxide stress response 2 2
TF Spro_3719 1 1
TF SrlR Sorbitol-6-phosphate Sorbitol utilization 1 1
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 6 6
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 11 14
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 3 3
TF XapR Deoxyinosine; Xanthosine Xanthosine utilization 1 1
TF YdcR 1 1
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 3 2
TF YjiR 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 12 11
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 4 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA Mg_sensor Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 2 2
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