Regulon of ExuR in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_04496 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Regulog: | ExuR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Enterobacteriales
- By TF family - GntR/Others
- By effector - Galacturonate
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -34
Score: 4.5 Sequence: CAGGTTGTATGACTAATTA
Locus tag: CKO_01541
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58) |
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uxaB
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Altronate oxidoreductase (EC 1.1.1.58)
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Position: -8
Score: 6.2 Sequence: AAATTGGTGTGATAACTTT
Locus tag: CKO_04494
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: CKO_04493
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) |
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uxaC
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Uronate isomerase (EC 5.3.1.12)
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uxaA
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Altronate hydrolase (EC 4.2.1.7)
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Position: -47
Score: 6 Sequence: AAAGTGGTATAACAAATAT
Locus tag: CKO_04496
Name: exuR Funciton: D-galacturonate transcriptional repressor, GntR family |
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exuR
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D-galacturonate transcriptional repressor, GntR family
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Position: -227
Score: 5.7 Sequence: GAAGTTGTATGACAAGTTA
Locus tag: CKO_04495
Name: exuT Funciton: Hexuronate transporter |
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exuT
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Hexuronate transporter
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Position: -157
Score: 5.8 Sequence: TAAGTTGTGTGACAAGTTC
Locus tag: CKO_02295
Name: lfaR Funciton: putative transcriptional regulator, LacI family |
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lfaR
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putative transcriptional regulator, LacI family
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Position: -59
Score: 4.6 Sequence: AAATTTGTGTGACACCAAA
Locus tag: CKO_02296
Name: lfaT Funciton: Putative MFS superfamily hexuronate transporter
Locus tag: CKO_02297
Name: lfaA Funciton: Alpha-glucosidase (EC 3.2.1.20) |
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lfaT
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Putative MFS superfamily hexuronate transporter
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lfaA
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Alpha-glucosidase (EC 3.2.1.20)
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Position: -191
Score: 4.4 Sequence: AAGTTGTTATACCAAATTA
Locus tag: CKO_00608
Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) |
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uxuB
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D-mannonate oxidoreductase (EC 1.1.1.57)
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Position: -31
Score: 5.3 Sequence: AATTTGGTATAACAACTTG
Locus tag: CKO_00609
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8) |
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uxuA
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Mannonate dehydratase (EC 4.2.1.8)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |