Regulog ExuR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Enterobacteriales
- By TF family - GntR/Others
- By effector - Galacturonate
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 5 | 4 |
| Salmonella typhimurium LT2 | ||
| Citrobacter koseri ATCC BAA-895 | 10 | 8 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 8 | 7 |
| Enterobacter sp. 638 | 9 | 7 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | 7 | 5 |
| Serratia proteamaculans 568 | 9 | 7 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 4 | 4 |
| Edwardsiella tarda EIB202 | 8 | 6 |
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| exuR |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -47 score = 5.99123 sequence = AAAGTGGTATAACAAATAT Gene: b3094: D-galacturonate transcriptional repressor, GntR family |
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -47 score = 5.99123 sequence = AAAGTGGTATAACAAATAT Gene: CKO_04496: D-galacturonate transcriptional repressor, GntR family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -48 score = 5.78866 sequence = AAAGTGGTATAACAAATCG Gene: KPN_03522: D-galacturonate transcriptional repressor, GntR family |
*
Enterobacter sp. 638 Site: position = -45 score = 6.07467 sequence = AAAGTGGTATAACAAATCA Gene: Ent638_3548: D-galacturonate transcriptional repressor, GntR family |
|
*
Yersinia pestis KIM Site: position = -105 score = 5.83319 sequence = TAAGTGGTATAACAAATCC Gene: y3602: D-galacturonate transcriptional repressor, GntR family |
*
Serratia proteamaculans 568 Site: position = -57 score = 5.83319 sequence = TAAGTGGTATAACAAATCC Gene: Spro_4323: D-galacturonate transcriptional repressor, GntR family |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -98 score = 5.87839 sequence = TAAGTGGTATAACAAATCA Gene: ECA0643: D-galacturonate transcriptional repressor, GntR family |
*
Edwardsiella tarda EIB202 Site: position = -68 score = 5.83373 sequence = AAAGTGGTATAACAACTCG Gene: ETAE_0434: D-galacturonate transcriptional repressor, GntR family |
|
|
D-galacturonate transcriptional repressor, GntR family |
| CRON 2. | |||||||||||||
| uxuB |
2
Escherichia coli str. K-12 substr. MG1655 Gene: b4323: D-mannonate oxidoreductase (EC 1.1.1.57) Gene: b2172: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: STM3136: D-mannonate oxidoreductase (EC 1.1.1.57) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -191 score = 4.42562 sequence = AAGTTGTTATACCAAATTA Gene: CKO_00608: D-mannonate oxidoreductase (EC 1.1.1.57) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -193 score = 3.72557 sequence = AAAGTtGTtatACcAaTaa Gene: KPN_02605: D-mannonate oxidoreductase (EC 1.1.1.57) |
*
Enterobacter sp. 638 Site: position = -193 score = 3.77065 sequence = AAAGTtGTtatACcAaTaT Gene: Ent638_2768: D-mannonate oxidoreductase (EC 1.1.1.57) |
|
*
Yersinia pestis KIM Site: position = -91 score = 5.30161 sequence = AAACTGGTCTAACAACTTT Gene: y2903: D-mannonate oxidoreductase (EC 1.1.1.57) |
*
Serratia proteamaculans 568 Site: position = -64 score = 5.28364 sequence = AAACTGGTCTGATAACTTC Gene: Spro_3239: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: ECA0819: D-mannonate oxidoreductase (EC 1.1.1.57) |
*
Edwardsiella tarda EIB202 Site: position = -89 score = 4.69588 sequence = CAAGTGGTCTAACACCTTT Gene: ETAE_2291: D-mannonate oxidoreductase (EC 1.1.1.57) |
|
Gene: plu0175: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxuA |
Gene: b4322: Mannonate dehydratase (EC 4.2.1.8) |
Gene: STM3135: Mannonate dehydratase (EC 4.2.1.8) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -31 score = 5.33473 sequence = AATTTGGTATAACAACTTG Gene: CKO_00609: Mannonate dehydratase (EC 4.2.1.8) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -34 score = 5.46954 sequence = TTATTGGTATAACAACTTT Gene: KPN_02604: Mannonate dehydratase (EC 4.2.1.8) |
*
Enterobacter sp. 638 Site: position = -32 score = 5.66582 sequence = ATATTGGTATAACAACTTT Gene: Ent638_2767: Mannonate dehydratase (EC 4.2.1.8) |
|
*
Yersinia pestis KIM Site: position = -240 score = 5.21248 sequence = AAATCGGTATAACAACATT Gene: y2902: Mannonate dehydratase (EC 4.2.1.8) |
*
Serratia proteamaculans 568 Site: position = -80 score = 5.01709 sequence = AATTTGGTATAACAAGATT Gene: Spro_3238: Mannonate dehydratase (EC 4.2.1.8) |
Gene: ECA1093: Mannonate dehydratase (EC 4.2.1.8) |
*
Edwardsiella tarda EIB202 Site: position = -101 score = 4.69694 sequence = GATTTGGTATGACAGATTA Gene: ETAE_2289: Mannonate dehydratase (EC 4.2.1.8) |
|
Gene: plu0170: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| CRON 3. | |||||||||||||
| uxaC |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -71 score = 6.21724 sequence = AAATTGGTGTGATAACTTT Gene: b3092: Uronate isomerase (EC 5.3.1.12) |
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -8 score = 6.21724 sequence = AAATTGGTGTGATAACTTT Gene: CKO_04494: Uronate isomerase (EC 5.3.1.12) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -90 score = 6.21724 sequence = AAATTGGTGTGATAACTTT Gene: KPN_03520: Uronate isomerase (EC 5.3.1.12) |
*
Enterobacter sp. 638 Site: position = -70 score = 6.21724 sequence = AAATTGGTGTGATAACTTT Gene: Ent638_3546: Uronate isomerase (EC 5.3.1.12) |
|
*
Yersinia pestis KIM Site: position = -69 score = 6.02096 sequence = TAATTGGTGTGATAACTTT Gene: y3600: Uronate isomerase (EC 5.3.1.12) |
*
Serratia proteamaculans 568 Site: position = -70 score = 6.21724 sequence = AAATTGGTGTGATAACTTT Gene: Spro_4321: Uronate isomerase (EC 5.3.1.12) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -67 score = 5.44594 sequence = TAATTGGTGTGATATCTTT Gene: ECA0645: Uronate isomerase (EC 5.3.1.12) |
*
Edwardsiella tarda EIB202 Site: position = -69 score = 6.12696 sequence = AAATTGGTGTGATAACTTC Gene: ETAE_0436: Uronate isomerase (EC 5.3.1.12) |
|
|
Uronate isomerase (EC 5.3.1.12) |
| uxaB |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -33 score = 4.34816 sequence = CAGGTTGTATGACTAATCA Gene: b1521: Altronate oxidoreductase (EC 1.1.1.58) |
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -34 score = 4.50182 sequence = CAGGTTGTATGACTAATTA Gene: CKO_01541: Altronate oxidoreductase (EC 1.1.1.58) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -34 score = 4.3098 sequence = CAGGTTGTATGACTACTAT Gene: KPN_01640: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: Ent638_2013: Altronate oxidoreductase (EC 1.1.1.58) |
|
Gene: y3599: Altronate oxidoreductase (EC 1.1.1.58) |
|
Gene: ECA0646: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: ETAE_0437: Altronate oxidoreductase (EC 1.1.1.58) |
|
|
Altronate oxidoreductase (EC 1.1.1.58) |
| uxaA |
Gene: b3091: Altronate hydrolase (EC 4.2.1.7) |
|
Gene: CKO_04493: Altronate hydrolase (EC 4.2.1.7) |
Gene: KPN_03519: Altronate hydrolase (EC 4.2.1.7) |
Gene: Ent638_3545: Altronate hydrolase (EC 4.2.1.7) |
|
Gene: y3598: Altronate hydrolase (EC 4.2.1.7) |
Gene: Spro_4320: Altronate hydrolase (EC 4.2.1.7) |
Gene: ECA0647: Altronate hydrolase (EC 4.2.1.7) |
Gene: ETAE_0438: Altronate hydrolase (EC 4.2.1.7) |
|
|
Altronate hydrolase (EC 4.2.1.7) |
| CRON 4. | |||||||||||||
| lfaR |
|
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -157 score = 5.82167 sequence = TAAGTTGTGTGACAAGTTC Gene: CKO_02295: putative transcriptional regulator, LacI family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -195 score = 4.53863 sequence = TCATTGGTATAACTAGTAT Gene: KPN_00854: putative transcriptional regulator, LacI family |
*
Enterobacter sp. 638 Site: position = -175 score = 5.59941 sequence = GAAGTTGTGTGACAAGTTC Gene: Ent638_1314: putative transcriptional regulator, LacI family |
|
Gene: y3231: putative transcriptional regulator, LacI family |
*
Serratia proteamaculans 568 Site: position = -196 score = 4.83135 sequence = TAATTGGACTGATAAATCT Gene: Spro_3600: putative transcriptional regulator, LacI family |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -176 score = 4.77789 sequence = AAATTGGTTTACCAAATTG Gene: ECA1966: putative transcriptional regulator, LacI family |
|
|
|
putative transcriptional regulator, LacI family |
| CRON 5. | |||||||||||||
| exuT |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -129 score = 6.15906 sequence = AAAGTTGTATGACAAGTTA Gene: b3093: Hexuronate transporter |
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -227 score = 5.74052 sequence = GAAGTTGTATGACAAGTTA Gene: CKO_04495: Hexuronate transporter |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -240 score = 6.15906 sequence = AAAGTTGTATGACAAGTTA Gene: KPN_03521: Hexuronate transporter |
*
Enterobacter sp. 638 Site: position = -116 score = 6.15906 sequence = AAAGTTGTATGACAAGTTA Gene: Ent638_3547: Hexuronate transporter |
|
*
Yersinia pestis KIM Site: position = -515 score = 5.62807 sequence = AAAtctGTATGACAAgTTa Gene: y3601: Hexuronate transporter |
*
Serratia proteamaculans 568 Site: position = -157 score = 5.62807 sequence = AAATCTGTATGACAAGTTA Gene: Spro_4322: Hexuronate transporter |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -185 score = 6.18769 sequence = AAAGTTGTATGACAAATTA Gene: ECA0644: Hexuronate transporter |
*
Edwardsiella tarda EIB202 Site: position = -282 score = 5.20953 sequence = GAATCTGTATGACAAGTTA Gene: ETAE_0435: Hexuronate transporter |
|
|
Hexuronate transporter |
| CRON 6. | |||||||||||||
| lfaT |
|
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -59 score = 4.62699 sequence = AAATTTGTGTGACACCAAA Gene: CKO_02296: Putative MFS superfamily hexuronate transporter |
Gene: KPN_00853: Putative MFS superfamily hexuronate transporter |
*
Enterobacter sp. 638 Site: position = -60 score = 4.44009 sequence = TAATCTGTGTGACAACCGA Gene: Ent638_1313: Putative MFS superfamily hexuronate transporter |
|
Gene: y3232: Putative MFS superfamily hexuronate transporter |
*
Serratia proteamaculans 568 Site: position = -209 score = 5.24728 sequence = GAATTGGTATACCAACTTT Gene: Spro_3599: Putative MFS superfamily hexuronate transporter |
Gene: ECA1967: Putative MFS superfamily hexuronate transporter |
|
|
|
Putative MFS superfamily hexuronate transporter |
| lfaA |
|
|
Gene: CKO_02297: Alpha-glucosidase (EC 3.2.1.20) |
Gene: KPN_00852: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Ent638_1312: Alpha-glucosidase (EC 3.2.1.20) |
|
Gene: y3233: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Spro_3598: Alpha-glucosidase (EC 3.2.1.20) |
Gene: ECA1968: Alpha-glucosidase (EC 3.2.1.20) |
|
|
|
Alpha-glucosidase (EC 3.2.1.20) |
| CRON 7. | |||||||||||||
| gntP |
Gene: b4321: Fructuronate transporter GntP |
|
|
|
|
|
Gene: y3426: Fructuronate transporter GntP |
|
|
*
Edwardsiella tarda EIB202 Site: position = -93 score = 5.32539 sequence = AAAGTGGTGTGATAACCGT Gene: ETAE_1036: Fructuronate transporter GntP |
|
|
Fructuronate transporter GntP |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |