Regulon of Fnr in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_01409 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Regulog: | Fnr - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 169 |
| - Operons | 66 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - CRP
- By effector - Oxygen
- By pathway - Energy metabolism
- By pathway - Anaerobic metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -347
Score: 5.6 Sequence: TTGATTTAAATCAA
Position: -250
Score: 4.1 Sequence: TTGATCAATGTCGA
Locus tag: CKO_02410
Name: cydA Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: CKO_02409
Name: cydB Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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cydA
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Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
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cydB
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Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
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Position: -216
Score: 4.1 Sequence: TTGATTTATTTCAC
Locus tag: CKO_02540
Name: citA Funciton: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
Locus tag: CKO_02539
Name: citB Funciton: Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family |
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citA
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Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
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citB
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Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
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Position: -40
Score: 4.4 Sequence: TTGACATACATCAT
Locus tag: CKO_00235
Name: hmp Funciton: Nitric oxide dioxygenase (EC 1.14.12.17) |
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hmp
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Nitric oxide dioxygenase (EC 1.14.12.17)
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Position: -198
Score: 4 Sequence: TCGATGTAAATTAA
Locus tag: CKO_00508
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: CKO_00509
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: CKO_00510
Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Locus tag: CKO_00511
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: CKO_00512
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: CKO_00513
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: CKO_00514
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: CKO_00515
Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: CKO_00516
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: CKO_00517
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: CKO_00518
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: CKO_00519
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: CKO_00520
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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nuoA
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NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
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NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
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nuoD
|
NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
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nuoE
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NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nuoF
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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nuoG
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NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH
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NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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nuoI
|
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL
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NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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Position: -146
Score: 4.7 Sequence: TTGATTAAAGACAA
Locus tag: CKO_03814
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) |
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nrfA
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Nitrite reductase, cytochrome c(552)
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Position: -73
Score: 4.7 Sequence: TTGATACTTATCAA
Locus tag: CKO_04957
Name: yhjA Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5) |
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yhjA
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Cytochrome c551 peroxidase (EC 1.11.1.5)
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Position: -122
Score: 4.2 Sequence: TTGTTTGAAATCAC
Locus tag: CKO_00079
Name: atpI Funciton: ATP synthase protein I
Locus tag: CKO_00078
Name: atpB Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: CKO_00077
Name: atpE Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: CKO_00076
Name: atpF Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: CKO_00075
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14) |
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atpI
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ATP synthase protein I
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atpB
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ATP synthase A chain (EC 3.6.3.14)
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atpE
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ATP synthase C chain (EC 3.6.3.14)
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atpF
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ATP synthase B chain (EC 3.6.3.14)
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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Position: -162
Score: 4.2 Sequence: TTTATTGTTATCAA
Locus tag: CKO_03906
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: CKO_03905
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
Locus tag: CKO_03904
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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aceK
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Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
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Position: 25
Score: 3.6 Sequence: ATGTGAAAAAACAA
Locus tag: CKO_02438
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: CKO_02437
Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: CKO_02436
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: CKO_02435
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
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sdhD
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Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -229
Score: 5.5 Sequence: TTGATTTATATCAA
Locus tag: CKO_01299
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -176
Score: 5.1 Sequence:
Position: -123
Score: 5.6 Sequence:
Locus tag: CKO_00205
Name: yfiD Funciton: Stress-induced alternate pyruvate formate-lyase subunit |
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yfiD
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Stress-induced alternate pyruvate formate-lyase subunit
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Position: -133
Score: 4.6 Sequence: ATGTTGTAAATCAA
Locus tag: CKO_03259
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: CKO_03258
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
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aceE
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Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
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aceF
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Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
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Position: -116
Score: 4.7 Sequence: CTGATTTCAATCAA
Locus tag: CKO_03260
Name: pdhR Funciton: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family |
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pdhR
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Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
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Position: -92
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: CKO_00498
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: -257
Score: 3.7 Sequence: TCGTTTTTTATCAT
Locus tag: CKO_00537
Name: glpT Funciton: Glycerol-3-phosphate transporter
Locus tag: CKO_00538
Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) |
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glpT
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Glycerol-3-phosphate transporter
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glpQ
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Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
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Position: -103
Score: 4.6 Sequence: TTGATCCATGTCAA
Locus tag: CKO_00293
Name: upp Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Locus tag: CKO_00294
Name: uraA2 Funciton: Uracil permease |
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upp
|
Uracil phosphoribosyltransferase (EC 2.4.2.9)
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uraA2
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Uracil permease
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Position: -72
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: CKO_04789
Name: nirB Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: CKO_04790
Name: nirD Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: CKO_04791
Name: nirC Funciton: Nitrite transporter
Locus tag: CKO_04792
Name: cysG Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nirB
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nirD
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nirC
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Nitrite transporter
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cysG
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -106
Score: 4.7 Sequence: TTGATTTTAATCAG
Locus tag: CKO_02537
Name: dcuC Funciton: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) |
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dcuC
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C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
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Position: -142
Score: 5.4 Sequence: TTGATATATATCAA
Locus tag: CKO_00285
Name: yfgF Funciton: Predicted cytochrome C-type biogenesis protein |
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yfgF
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Predicted cytochrome C-type biogenesis protein
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Position: -184
Score: 4.1 Sequence: GTGAAATAAATCAA
Locus tag: CKO_02541
Name: citC Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: CKO_02542
Name: citD Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: CKO_02543
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: CKO_02544
Name: citF Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: CKO_02545
Name: citX Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: CKO_02546
Name: citG Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25) |
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citC
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[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
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citD
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Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
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citE
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Citrate lyase beta chain (EC 4.1.3.6)
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citF
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Citrate lyase alpha chain (EC 4.1.3.6)
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citX
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Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
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citG
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2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
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Position: -163
Score: 5.2 Sequence: TTGATGTACATCAA
Locus tag: CKO_01946
Name: ndh Funciton: NADH dehydrogenase (EC 1.6.99.3) |
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ndh
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NADH dehydrogenase (EC 1.6.99.3)
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Position: -132
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: CKO_03085
Name: pfkA Funciton: 6-phosphofructokinase (EC 2.7.1.11) |
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pfkA
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6-phosphofructokinase (EC 2.7.1.11)
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Position: -151
Score: 4 Sequence: TTAATCAGAATCAA
Locus tag: CKO_03678
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: CKO_03679
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: CKO_03680
Name: frdC Funciton: Fumarate reductase subunit C
Locus tag: CKO_03681
Name: frdD Funciton: Fumarate reductase subunit D |
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frdA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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frdB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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frdC
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Fumarate reductase subunit C
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frdD
|
Fumarate reductase subunit D
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Position: -105
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: CKO_01301
Name: narG Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: CKO_01302
Name: narH Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: CKO_01303
Name: narJ Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: CKO_01304
Name: narI Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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narG
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Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
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narH
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Respiratory nitrate reductase beta chain (EC 1.7.99.4)
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narJ
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Respiratory nitrate reductase delta chain (EC 1.7.99.4)
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narI
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Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
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Position: -76
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: CKO_02206
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: CKO_02207
Name: hcr Funciton: NADH oxidoreductase hcr (EC 1.-.-.-) |
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hcp
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Hydroxylamine reductase (EC 1.7.-.-)
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hcr
|
NADH oxidoreductase hcr (EC 1.-.-.-)
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Position: -70
Score: 4.1 Sequence: TTGACCTGCGTCAA
Locus tag: CKO_02286
Name: ybiY Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: CKO_02287
Name: ybiW Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
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ybiY
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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ybiW
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Pyruvate formate-lyase (EC 2.3.1.54)
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Position: -218
Score: 3.7 Sequence: TTGTTTTACATTGA
Locus tag: CKO_03343
Name: null Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: CKO_03344
Name: caiA Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: CKO_03345
Name: caiB Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: CKO_03346
Name: caiC Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: CKO_03347
Name: caiD Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: CKO_03348
Name: caiE Funciton: possible synthesis of cofactor for carnitine racemase and dehydratase |
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L-carnitine/gamma-butyrobetaine antiporter
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caiA
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Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
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caiB
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Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
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caiC
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Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
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caiD
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Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
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caiE
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possible synthesis of cofactor for carnitine racemase and dehydratase
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Position: -295
Score: 3.8 Sequence: TTAATATTGATCAG
Locus tag: CKO_02557
Name: ybdN Funciton: Predicted sulfotransferase |
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ybdN
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Predicted sulfotransferase
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Position: -116
Score: 4.9 Sequence: ATGATCTATATCAA
Locus tag: CKO_02167
Name: focA Funciton: Formate efflux transporter (TC 2.A.44 family)
Locus tag: CKO_02168
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
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focA
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Formate efflux transporter (TC 2.A.44 family)
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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Position: -73
Score: 3.7 Sequence: ATGAGGAAGGTCAA
Locus tag: CKO_04838
Name: malP Funciton: Maltodextrin phosphorylase (EC 2.4.1.1)
Locus tag: CKO_04837
Name: malQ Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
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malP
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Maltodextrin phosphorylase (EC 2.4.1.1)
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malQ
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4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
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Position: -228
Score: 3.8 Sequence: TTGATCCAGAACAC
Locus tag: CKO_04926
Name: nikA Funciton: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
Locus tag: CKO_04927
Name: nikB Funciton: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
Locus tag: CKO_04928
Name: nikC Funciton: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
Locus tag: CKO_04929
Name: nikD Funciton: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
Locus tag: CKO_04930
Name: nikE Funciton: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
Locus tag: CKO_04931
Name: nikR Funciton: Nickel responsive regulator NikR |
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nikA
|
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
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nikB
|
Nickel transport system permease protein NikB (TC 3.A.1.5.3)
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nikC
|
Nickel transport system permease protein NikC (TC 3.A.1.5.3)
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nikD
|
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
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nikE
|
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
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nikR
|
Nickel responsive regulator NikR
|
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Position: -117
Score: 3.6 Sequence: CTGATTTTTCTCAT
Locus tag: CKO_02177
Name: dmsA Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) |
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dmsA
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
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Position: -204
Score: 4.1 Sequence: TTGAGCCATGTCAA
Locus tag: CKO_04830
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: CKO_04831
Name: feoB Funciton: Ferrous iron transport protein B
Locus tag: CKO_04832
Name: feoC Funciton: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family |
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feoA
|
Ferrous iron transport protein A
|
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feoB
|
Ferrous iron transport protein B
|
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feoC
|
Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
|
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Position: -253
Score: 4.7 Sequence: CTGATGTATATCAA
Locus tag: CKO_02345
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: CKO_02344
Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: CKO_02343
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: CKO_02342
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: CKO_02341
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE |
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moaA
|
Molybdenum cofactor biosynthesis protein MoaA
|
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|
moaB
|
Molybdenum cofactor biosynthesis protein MoaB
|
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|
moaC
|
Molybdenum cofactor biosynthesis protein MoaC
|
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moaD
|
Molybdenum cofactor biosynthesis protein MoaD
|
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moaE
|
Molybdenum cofactor biosynthesis protein MoaE
|
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|
Position: -3
Score: 4.1 Sequence: CCGATGTATATCAA
Locus tag: CKO_01448
Name: aldA Funciton: Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21) |
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aldA
|
Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21)
|
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Position: -162
Score: 4.7 Sequence: TTGATAACGATCAA
Locus tag: CKO_01699
Name: ydhY Funciton: Predicted oxidoreductase, Fe-S subunit
Locus tag: CKO_01698
Name: ydhV Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01697
Name: ydhW Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01696
Name: ydhX Funciton: Predicted oxidoreductase, Fe-S subunit
Locus tag: CKO_01695
Name: ydhU Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01694
Name: ydhT Funciton: Predicted oxidoreductase subunit |
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ydhY
|
Predicted oxidoreductase, Fe-S subunit
|
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ydhV
|
Predicted oxidoreductase subunit
|
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|
ydhW
|
Predicted oxidoreductase subunit
|
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ydhX
|
Predicted oxidoreductase, Fe-S subunit
|
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ydhU
|
Predicted oxidoreductase subunit
|
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|
ydhT
|
Predicted oxidoreductase subunit
|
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|
Position: -43
Score: 3.8 Sequence: TTGATCCAACTCAC
Locus tag: CKO_04494
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: CKO_04493
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) |
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uxaC
|
Uronate isomerase (EC 5.3.1.12)
|
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uxaA
|
Altronate hydrolase (EC 4.2.1.7)
|
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|
Position: -101
Score: 4.2 Sequence: GCGATCTAAATCAA
Locus tag: CKO_04485
Name: aer Funciton: Aerotaxis sensor receptor |
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aer
|
Aerotaxis sensor receptor
|
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|
Position: -90
Score: 4.2 Sequence: TTATTTAAAATCAA
Locus tag: CKO_04064
Name: norV Funciton: Anaerobic nitric oxide reductase flavorubredoxin
Locus tag: CKO_04065
Name: norW Funciton: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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norV
|
Anaerobic nitric oxide reductase flavorubredoxin
|
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norW
|
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
|
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|
Position: -235
Score: 4.2 Sequence: TTGATGCAAATCAC
Locus tag: CKO_03580
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: CKO_03581
Name: null Funciton: hypothetical protein
Locus tag: CKO_03582
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
|
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
|
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|
hypothetical protein
|
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|
nrdG
|
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
|
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|
Position: -133
Score: 4.1 Sequence: GTGATTTACATCAC
Locus tag: CKO_00172
Name: ysgA Funciton: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) |
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ysgA
|
Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
|
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|
Position: -243
Score: 4.4 Sequence: CTGTTTTTAATCAA
Locus tag: CKO_00065
Name: pstS Funciton: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
Locus tag: CKO_00064
Name: pstC Funciton: Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Locus tag: CKO_00063
Name: pstA Funciton: Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
Locus tag: CKO_00062
Name: pstB Funciton: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
Locus tag: CKO_00061
Name: phoU Funciton: Phosphate transport system regulatory protein PhoU |
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|
pstS
|
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
|
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|
pstC
|
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
|
||
|
pstA
|
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
|
||
|
pstB
|
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
|
||
|
phoU
|
Phosphate transport system regulatory protein PhoU
|
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|
Position: -67
Score: 3.8 Sequence: TTGATTTATGTAAC
Locus tag: CKO_02439
Name: gltA Funciton: Citrate synthase (EC 2.3.3.1) |
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|
gltA
|
Citrate synthase (EC 2.3.3.1)
|
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|
Position: -30
Score: 3.8 Sequence: ATGATAAAAAACGA
Locus tag: CKO_00536
Name: glpA Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Locus tag: CKO_00535
Name: glpB Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
Locus tag: CKO_00534
Name: glpC Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3) |
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|
glpA
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
|
||
|
glpB
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
|
||
|
glpC
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
|
||
|
Position: -117
Score: 4.1 Sequence: TTAATCTGGATCAA
Locus tag: CKO_01333
Name: ompW Funciton: outer membrane protein W; colicin S4 receptor; putative transporter |
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|
ompW
|
outer membrane protein W; colicin S4 receptor; putative transporter
|
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|
Position: -238
Score: 4.1 Sequence: TTGATCTGGATCAC
Locus tag: CKO_01318
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
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|
Position: -199
Score: 3.3 Sequence: GTGATCCCCATCAG
Locus tag: CKO_03745
Name: dcuS Funciton: Fumarate respiration sensor kinase protein DcuS
Locus tag: CKO_03746
Name: dcuR Funciton: Fumarate respiration transcriptional regulator DcuR |
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|
dcuS
|
Fumarate respiration sensor kinase protein DcuS
|
||
|
dcuR
|
Fumarate respiration transcriptional regulator DcuR
|
||
|
Position: -288
Score: 3.7 Sequence: CTGTTTTCCATCAT
Locus tag: CKO_01043
Name: yecR Funciton: putative outer membrane lipoprotein |
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|
yecR
|
putative outer membrane lipoprotein
|
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|
Position: -145
Score: 4.7 Sequence: TTGACCTAAAACAA
Locus tag: CKO_02173
Name: ycaC Funciton: Nicotinamidase family protein YcaC |
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|
ycaC
|
Nicotinamidase family protein YcaC
|
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|
Position: -19
Score: 3.3 Sequence: TTTATAAGGATAAA
Locus tag: CKO_00581
Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: CKO_00582
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: CKO_00583
Name: null Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH |
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|
ccmF
|
Cytochrome c heme lyase subunit CcmF
|
||
|
ccmG
|
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
|
||
|
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
|
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|
Position: -136
Score: 3.6 Sequence: TTGACTGGCGACAA
Locus tag: CKO_00577
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: CKO_00578
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: CKO_00579
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
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|
ccmC
|
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
Cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
Position: -35
Score: 3.4 Sequence: TTGCCCGACATCAG
Locus tag: CKO_00568
Name: null Funciton: Periplasmic nitrate reductase component NapD
Locus tag: CKO_00569
Name: null Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: CKO_00570
Name: null Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: CKO_00571
Name: null Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: CKO_00572
Name: null Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: CKO_00573
Name: null Funciton: Cytochrome c-type protein NapC
Locus tag: CKO_00574
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
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|
Periplasmic nitrate reductase component NapD
|
|||
|
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
|
|||
|
Ferredoxin-type protein NapG (periplasmic nitrate reductase)
|
|||
|
Polyferredoxin NapH (periplasmic nitrate reductase)
|
|||
|
Nitrate reductase cytochrome c550-type subunit
|
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|
Cytochrome c-type protein NapC
|
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|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
Position: -267
Score: 3.7 Sequence: TTGTTGATAATTAA
Locus tag: CKO_02729
Name: cyoA Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: CKO_02730
Name: cyoB Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: CKO_02731
Name: cyoC Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: CKO_02732
Name: cyoD Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: CKO_02733
Name: cyoE Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB |
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|
cyoA
|
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
|
||
|
cyoB
|
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
|
||
|
cyoC
|
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
|
||
|
cyoD
|
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
|
||
|
cyoE
|
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
|
||
|
Position: -25
Score: 4.4 Sequence: TTGTTAAACAACAA
Locus tag: CKO_03697
Name: dcuA Funciton: C4-dicarboxylate transporter DcuA |
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|
dcuA
|
C4-dicarboxylate transporter DcuA
|
||
|
Position: -43
Score: 3.7 Sequence: TTAATGAAAATCGA
Locus tag: CKO_02124
Name: ssuE Funciton: FMN reductase (EC 1.5.1.29)
Locus tag: CKO_02125
Name: ssuA Funciton: Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
Locus tag: CKO_02126
Name: ssuD Funciton: Alkanesulfonate monooxygenase (EC 1.14.14.5)
Locus tag: CKO_02127
Name: ssuC Funciton: Alkanesulfonates transport system permease protein
Locus tag: CKO_02128
Name: ssuB Funciton: Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB |
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|
ssuE
|
FMN reductase (EC 1.5.1.29)
|
||
|
ssuA
|
Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
|
||
|
ssuD
|
Alkanesulfonate monooxygenase (EC 1.14.14.5)
|
||
|
ssuC
|
Alkanesulfonates transport system permease protein
|
||
|
ssuB
|
Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB
|
||
|
Position: -42
Score: 3.3 Sequence: TTGCTTATTAATAA
Locus tag: CKO_01926
Name: pepT Funciton: Tripeptide aminopeptidase (EC 3.4.11.4) |
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|
pepT
|
Tripeptide aminopeptidase (EC 3.4.11.4)
|
||
|
Position: -209
Score: 5.6 Sequence: TTGATTTAAATCAA
Position: -156
Score: 5.1 Sequence: TTGTTTTACATCAA
Locus tag: CKO_00204
Name: ung Funciton: Uracil-DNA glycosylase (EC 3.2.2.27) |
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|
ung
|
Uracil-DNA glycosylase (EC 3.2.2.27)
|
||
|
Position: -337
Score: 4 Sequence: TTGATTACTATCTA
Locus tag: CKO_00756
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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|
gnd
|
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
|
||
|
Position: -25
Score: 4.4 Sequence: TTGTTAAACAACAA
Locus tag: CKO_03697
Name: dcuA Funciton: Anaerobic C4-dicarboxylate transporter |
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|
dcuA
|
Anaerobic C4-dicarboxylate transporter
|
||
|
Position: -83
Score: 3.8 Sequence: TCGCTTTACCTCAA
Locus tag: CKO_03828
Name: soxS Funciton: AraC-family transcriptional regulator |
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|
soxS
|
AraC-family transcriptional regulator
|
||
|
Position: -17
Score: 3.4 Sequence: TTGAGGTAAAGCGA
Locus tag: CKO_03827
Name: soxR Funciton: redox-sensitive transcriptional activator (MerR-family transcriptional regulator) |
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|
soxR
|
redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
|
||
|
Position: -32
Score: 4.3 Sequence:
Locus tag: CKO_01582
Name: null Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: CKO_01583
Name: ynfG Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: CKO_01584
Name: ynfH Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
Locus tag: CKO_01585
Name: ynfI Funciton: Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD |
|||
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
|
|||
|
ynfG
|
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
|
||
|
ynfH
|
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
|
||
|
ynfI
|
Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
|
||
|
Position: -114
Score: 3.7 Sequence: TTGACATGGATTAA
Locus tag: CKO_01581
Name: null Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) |
|||
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
|
|||
|
Position: -83
Score: 3.8 Sequence: TTGATGTAAAGTAA
Locus tag: CKO_01409
Name: fnr Funciton: Fumarate and nitrate reduction regulatory protein |
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|
fnr
|
Fumarate and nitrate reduction regulatory protein
|
||
|
Position: -183
Score: 4.2 Sequence: TTGACAAAAATCAT
Locus tag: CKO_04518
Name: tdcA Funciton: Threonine catabolism transcriptional regulator TdcA, LysR family
Locus tag: CKO_04517
Name: tdcB Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: CKO_04516
Name: tdcC Funciton: L-threonine transporter, anaerobically inducible
Locus tag: CKO_04515
Name: tdcD Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: CKO_04514
Name: tdcE Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: CKO_04513
Name: yhaR Funciton: Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
Locus tag: CKO_04512
Name: null Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG |
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|
tdcA
|
Threonine catabolism transcriptional regulator TdcA, LysR family
|
||
|
tdcB
|
Threonine dehydratase, catabolic (EC 4.3.1.19)
|
||
|
tdcC
|
L-threonine transporter, anaerobically inducible
|
||
|
tdcD
|
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
|
||
|
tdcE
|
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
|
||
|
yhaR
|
Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
|
||
|
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
|
|||
|
Position: -291
Score: 5.1 Sequence: TTGATATATGTCAA
Locus tag: CKO_03387
Name: arcA Funciton: Aerobic respiration control protein arcA |
|||
|
arcA
|
Aerobic respiration control protein arcA
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |