Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Citrobacter koseri ATCC BAA-895

Properties
Regulator type: Transcription factor
TF locus tag: CKO_01409
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Enterobacteriales
Statistics of regulated genes:
- Genes 169
- Operons 66
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 685 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -347
Score: 5.6
Sequence: TTGATTTAAATCAA
Position: -250
Score: 4.1
Sequence: TTGATCAATGTCGA
Locus tag: CKO_02410
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: CKO_02409
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
CKO_02410
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
CKO_02409
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Position: -216
Score: 4.1
Sequence: TTGATTTATTTCAC
Locus tag: CKO_02540
Name: citA
Funciton: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
Locus tag: CKO_02539
Name: citB
Funciton: Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
CKO_02540
citA
Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
CKO_02539
citB
Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
Position: -40
Score: 4.4
Sequence: TTGACATACATCAT
Locus tag: CKO_00235
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
CKO_00235
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)
Position: -198
Score: 4
Sequence: TCGATGTAAATTAA
Locus tag: CKO_00508
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: CKO_00509
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: CKO_00510
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Locus tag: CKO_00511
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: CKO_00512
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: CKO_00513
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: CKO_00514
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: CKO_00515
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: CKO_00516
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: CKO_00517
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: CKO_00518
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: CKO_00519
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: CKO_00520
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
CKO_00508
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
CKO_00509
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
CKO_00510
nuoD
NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
CKO_00511
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
CKO_00512
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
CKO_00513
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
CKO_00514
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
CKO_00515
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
CKO_00516
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
CKO_00517
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
CKO_00518
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
CKO_00519
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
CKO_00520
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -146
Score: 4.7
Sequence: TTGATTAAAGACAA
Locus tag: CKO_03814
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
CKO_03814
nrfA
Nitrite reductase, cytochrome c(552)
Position: -73
Score: 4.7
Sequence: TTGATACTTATCAA
Locus tag: CKO_04957
Name: yhjA
Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
CKO_04957
yhjA
Cytochrome c551 peroxidase (EC 1.11.1.5)
Position: -122
Score: 4.2
Sequence: TTGTTTGAAATCAC
Locus tag: CKO_00079
Name: atpI
Funciton: ATP synthase protein I
Locus tag: CKO_00078
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: CKO_00077
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: CKO_00076
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: CKO_00075
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
CKO_00079
atpI
ATP synthase protein I
CKO_00078
atpB
ATP synthase A chain (EC 3.6.3.14)
CKO_00077
atpE
ATP synthase C chain (EC 3.6.3.14)
CKO_00076
atpF
ATP synthase B chain (EC 3.6.3.14)
CKO_00075
atpH
ATP synthase delta chain (EC 3.6.3.14)
Position: -162
Score: 4.2
Sequence: TTTATTGTTATCAA
Locus tag: CKO_03906
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: CKO_03905
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Locus tag: CKO_03904
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
CKO_03906
aceB
Malate synthase (EC 2.3.3.9)
CKO_03905
aceA
Isocitrate lyase (EC 4.1.3.1)
CKO_03904
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Position: 25
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: CKO_02438
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: CKO_02437
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: CKO_02436
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: CKO_02435
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
CKO_02438
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
CKO_02437
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
CKO_02436
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
CKO_02435
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -229
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: CKO_01299
Name: narK
Funciton: Nitrate/nitrite antiporter
CKO_01299
narK
Nitrate/nitrite antiporter
Position: -176
Score: 5.1
Sequence:
Position: -123
Score: 5.6
Sequence:
Locus tag: CKO_00205
Name: yfiD
Funciton: Stress-induced alternate pyruvate formate-lyase subunit
CKO_00205
yfiD
Stress-induced alternate pyruvate formate-lyase subunit
Position: -133
Score: 4.6
Sequence: ATGTTGTAAATCAA
Locus tag: CKO_03259
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: CKO_03258
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
CKO_03259
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
CKO_03258
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Position: -116
Score: 4.7
Sequence: CTGATTTCAATCAA
Locus tag: CKO_03260
Name: pdhR
Funciton: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
CKO_03260
pdhR
Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Position: -92
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: CKO_00498
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
CKO_00498
ackA
Acetate kinase (EC 2.7.2.1)
Position: -257
Score: 3.7
Sequence: TCGTTTTTTATCAT
Locus tag: CKO_00537
Name: glpT
Funciton: Glycerol-3-phosphate transporter
Locus tag: CKO_00538
Name: glpQ
Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
CKO_00537
glpT
Glycerol-3-phosphate transporter
CKO_00538
glpQ
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Position: -103
Score: 4.6
Sequence: TTGATCCATGTCAA
Locus tag: CKO_00293
Name: upp
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Locus tag: CKO_00294
Name: uraA2
Funciton: Uracil permease
CKO_00293
upp
Uracil phosphoribosyltransferase (EC 2.4.2.9)
CKO_00294
uraA2
Uracil permease
Position: -72
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: CKO_04789
Name: nirB
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: CKO_04790
Name: nirD
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: CKO_04791
Name: nirC
Funciton: Nitrite transporter
Locus tag: CKO_04792
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
CKO_04789
nirB
Nitrite reductase, large subunit (EC 1.7.1.4)
CKO_04790
nirD
Nitrite reductase, small subunit (EC 1.7.1.4)
CKO_04791
nirC
Nitrite transporter
CKO_04792
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -106
Score: 4.7
Sequence: TTGATTTTAATCAG
Locus tag: CKO_02537
Name: dcuC
Funciton: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
CKO_02537
dcuC
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Position: -142
Score: 5.4
Sequence: TTGATATATATCAA
Locus tag: CKO_00285
Name: yfgF
Funciton: Predicted cytochrome C-type biogenesis protein
CKO_00285
yfgF
Predicted cytochrome C-type biogenesis protein
Position: -184
Score: 4.1
Sequence: GTGAAATAAATCAA
Locus tag: CKO_02541
Name: citC
Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: CKO_02542
Name: citD
Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: CKO_02543
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: CKO_02544
Name: citF
Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: CKO_02545
Name: citX
Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: CKO_02546
Name: citG
Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
CKO_02541
citC
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
CKO_02542
citD
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
CKO_02543
citE
Citrate lyase beta chain (EC 4.1.3.6)
CKO_02544
citF
Citrate lyase alpha chain (EC 4.1.3.6)
CKO_02545
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
CKO_02546
citG
2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
Position: -163
Score: 5.2
Sequence: TTGATGTACATCAA
Locus tag: CKO_01946
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
CKO_01946
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -132
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: CKO_03085
Name: pfkA
Funciton: 6-phosphofructokinase (EC 2.7.1.11)
CKO_03085
pfkA
6-phosphofructokinase (EC 2.7.1.11)
Position: -151
Score: 4
Sequence: TTAATCAGAATCAA
Locus tag: CKO_03678
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: CKO_03679
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: CKO_03680
Name: frdC
Funciton: Fumarate reductase subunit C
Locus tag: CKO_03681
Name: frdD
Funciton: Fumarate reductase subunit D
CKO_03678
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
CKO_03679
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
CKO_03680
frdC
Fumarate reductase subunit C
CKO_03681
frdD
Fumarate reductase subunit D
Position: -105
Score: 4.7
Sequence: TTGATCGTTATCAA
Locus tag: CKO_01301
Name: narG
Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: CKO_01302
Name: narH
Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: CKO_01303
Name: narJ
Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: CKO_01304
Name: narI
Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
CKO_01301
narG
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
CKO_01302
narH
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
CKO_01303
narJ
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
CKO_01304
narI
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
Position: -76
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: CKO_02206
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: CKO_02207
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
CKO_02206
hcp
Hydroxylamine reductase (EC 1.7.-.-)
CKO_02207
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)
Position: -70
Score: 4.1
Sequence: TTGACCTGCGTCAA
Locus tag: CKO_02286
Name: ybiY
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: CKO_02287
Name: ybiW
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
CKO_02286
ybiY
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
CKO_02287
ybiW
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -218
Score: 3.7
Sequence: TTGTTTTACATTGA
Locus tag: CKO_03343
Name: null
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: CKO_03344
Name: caiA
Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: CKO_03345
Name: caiB
Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: CKO_03346
Name: caiC
Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: CKO_03347
Name: caiD
Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: CKO_03348
Name: caiE
Funciton: possible synthesis of cofactor for carnitine racemase and dehydratase
CKO_03343
L-carnitine/gamma-butyrobetaine antiporter
CKO_03344
caiA
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
CKO_03345
caiB
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
CKO_03346
caiC
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
CKO_03347
caiD
Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
CKO_03348
caiE
possible synthesis of cofactor for carnitine racemase and dehydratase
Position: -295
Score: 3.8
Sequence: TTAATATTGATCAG
Locus tag: CKO_02557
Name: ybdN
Funciton: Predicted sulfotransferase
CKO_02557
ybdN
Predicted sulfotransferase
Position: -116
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: CKO_02167
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
Locus tag: CKO_02168
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
CKO_02167
focA
Formate efflux transporter (TC 2.A.44 family)
CKO_02168
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -73
Score: 3.7
Sequence: ATGAGGAAGGTCAA
Locus tag: CKO_04838
Name: malP
Funciton: Maltodextrin phosphorylase (EC 2.4.1.1)
Locus tag: CKO_04837
Name: malQ
Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
CKO_04838
malP
Maltodextrin phosphorylase (EC 2.4.1.1)
CKO_04837
malQ
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
Position: -228
Score: 3.8
Sequence: TTGATCCAGAACAC
Locus tag: CKO_04926
Name: nikA
Funciton: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
Locus tag: CKO_04927
Name: nikB
Funciton: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
Locus tag: CKO_04928
Name: nikC
Funciton: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
Locus tag: CKO_04929
Name: nikD
Funciton: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
Locus tag: CKO_04930
Name: nikE
Funciton: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
Locus tag: CKO_04931
Name: nikR
Funciton: Nickel responsive regulator NikR
CKO_04926
nikA
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
CKO_04927
nikB
Nickel transport system permease protein NikB (TC 3.A.1.5.3)
CKO_04928
nikC
Nickel transport system permease protein NikC (TC 3.A.1.5.3)
CKO_04929
nikD
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
CKO_04930
nikE
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
CKO_04931
nikR
Nickel responsive regulator NikR
Position: -117
Score: 3.6
Sequence: CTGATTTTTCTCAT
Locus tag: CKO_02177
Name: dmsA
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
CKO_02177
dmsA
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Position: -204
Score: 4.1
Sequence: TTGAGCCATGTCAA
Locus tag: CKO_04830
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: CKO_04831
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: CKO_04832
Name: feoC
Funciton: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
CKO_04830
feoA
Ferrous iron transport protein A
CKO_04831
feoB
Ferrous iron transport protein B
CKO_04832
feoC
Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
Position: -253
Score: 4.7
Sequence: CTGATGTATATCAA
Locus tag: CKO_02345
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: CKO_02344
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: CKO_02343
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: CKO_02342
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: CKO_02341
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
CKO_02345
moaA
Molybdenum cofactor biosynthesis protein MoaA
CKO_02344
moaB
Molybdenum cofactor biosynthesis protein MoaB
CKO_02343
moaC
Molybdenum cofactor biosynthesis protein MoaC
CKO_02342
moaD
Molybdenum cofactor biosynthesis protein MoaD
CKO_02341
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -3
Score: 4.1
Sequence: CCGATGTATATCAA
Locus tag: CKO_01448
Name: aldA
Funciton: Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21)
CKO_01448
aldA
Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21)
Position: -162
Score: 4.7
Sequence: TTGATAACGATCAA
Locus tag: CKO_01699
Name: ydhY
Funciton: Predicted oxidoreductase, Fe-S subunit
Locus tag: CKO_01698
Name: ydhV
Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01697
Name: ydhW
Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01696
Name: ydhX
Funciton: Predicted oxidoreductase, Fe-S subunit
Locus tag: CKO_01695
Name: ydhU
Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01694
Name: ydhT
Funciton: Predicted oxidoreductase subunit
CKO_01699
ydhY
Predicted oxidoreductase, Fe-S subunit
CKO_01698
ydhV
Predicted oxidoreductase subunit
CKO_01697
ydhW
Predicted oxidoreductase subunit
CKO_01696
ydhX
Predicted oxidoreductase, Fe-S subunit
CKO_01695
ydhU
Predicted oxidoreductase subunit
CKO_01694
ydhT
Predicted oxidoreductase subunit
Position: -43
Score: 3.8
Sequence: TTGATCCAACTCAC
Locus tag: CKO_04494
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: CKO_04493
Name: uxaA
Funciton: Altronate hydrolase (EC 4.2.1.7)
CKO_04494
uxaC
Uronate isomerase (EC 5.3.1.12)
CKO_04493
uxaA
Altronate hydrolase (EC 4.2.1.7)
Position: -101
Score: 4.2
Sequence: GCGATCTAAATCAA
Locus tag: CKO_04485
Name: aer
Funciton: Aerotaxis sensor receptor
CKO_04485
aer
Aerotaxis sensor receptor
Position: -90
Score: 4.2
Sequence: TTATTTAAAATCAA
Locus tag: CKO_04064
Name: norV
Funciton: Anaerobic nitric oxide reductase flavorubredoxin
Locus tag: CKO_04065
Name: norW
Funciton: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
CKO_04064
norV
Anaerobic nitric oxide reductase flavorubredoxin
CKO_04065
norW
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
Position: -235
Score: 4.2
Sequence: TTGATGCAAATCAC
Locus tag: CKO_03580
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: CKO_03581
Name: null
Funciton: hypothetical protein
Locus tag: CKO_03582
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
CKO_03580
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
CKO_03581
hypothetical protein
CKO_03582
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -133
Score: 4.1
Sequence: GTGATTTACATCAC
Locus tag: CKO_00172
Name: ysgA
Funciton: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
CKO_00172
ysgA
Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Position: -243
Score: 4.4
Sequence: CTGTTTTTAATCAA
Locus tag: CKO_00065
Name: pstS
Funciton: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
Locus tag: CKO_00064
Name: pstC
Funciton: Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Locus tag: CKO_00063
Name: pstA
Funciton: Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
Locus tag: CKO_00062
Name: pstB
Funciton: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
Locus tag: CKO_00061
Name: phoU
Funciton: Phosphate transport system regulatory protein PhoU
CKO_00065
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
CKO_00064
pstC
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
CKO_00063
pstA
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
CKO_00062
pstB
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
CKO_00061
phoU
Phosphate transport system regulatory protein PhoU
Position: -67
Score: 3.8
Sequence: TTGATTTATGTAAC
Locus tag: CKO_02439
Name: gltA
Funciton: Citrate synthase (EC 2.3.3.1)
CKO_02439
gltA
Citrate synthase (EC 2.3.3.1)
Position: -30
Score: 3.8
Sequence: ATGATAAAAAACGA
Locus tag: CKO_00536
Name: glpA
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Locus tag: CKO_00535
Name: glpB
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
Locus tag: CKO_00534
Name: glpC
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
CKO_00536
glpA
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
CKO_00535
glpB
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
CKO_00534
glpC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
Position: -117
Score: 4.1
Sequence: TTAATCTGGATCAA
Locus tag: CKO_01333
Name: ompW
Funciton: outer membrane protein W; colicin S4 receptor; putative transporter
CKO_01333
ompW
outer membrane protein W; colicin S4 receptor; putative transporter
Position: -238
Score: 4.1
Sequence: TTGATCTGGATCAC
Locus tag: CKO_01318
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
CKO_01318
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -199
Score: 3.3
Sequence: GTGATCCCCATCAG
Locus tag: CKO_03745
Name: dcuS
Funciton: Fumarate respiration sensor kinase protein DcuS
Locus tag: CKO_03746
Name: dcuR
Funciton: Fumarate respiration transcriptional regulator DcuR
CKO_03745
dcuS
Fumarate respiration sensor kinase protein DcuS
CKO_03746
dcuR
Fumarate respiration transcriptional regulator DcuR
Position: -288
Score: 3.7
Sequence: CTGTTTTCCATCAT
Locus tag: CKO_01043
Name: yecR
Funciton: putative outer membrane lipoprotein
CKO_01043
yecR
putative outer membrane lipoprotein
Position: -145
Score: 4.7
Sequence: TTGACCTAAAACAA
Locus tag: CKO_02173
Name: ycaC
Funciton: Nicotinamidase family protein YcaC
CKO_02173
ycaC
Nicotinamidase family protein YcaC
Position: -19
Score: 3.3
Sequence: TTTATAAGGATAAA
Locus tag: CKO_00581
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: CKO_00582
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: CKO_00583
Name: null
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
CKO_00581
ccmF
Cytochrome c heme lyase subunit CcmF
CKO_00582
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
CKO_00583
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Position: -136
Score: 3.6
Sequence: TTGACTGGCGACAA
Locus tag: CKO_00577
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: CKO_00578
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: CKO_00579
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
CKO_00577
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
CKO_00578
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
CKO_00579
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -35
Score: 3.4
Sequence: TTGCCCGACATCAG
Locus tag: CKO_00568
Name: null
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: CKO_00569
Name: null
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: CKO_00570
Name: null
Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: CKO_00571
Name: null
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: CKO_00572
Name: null
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: CKO_00573
Name: null
Funciton: Cytochrome c-type protein NapC
Locus tag: CKO_00574
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
CKO_00568
Periplasmic nitrate reductase component NapD
CKO_00569
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
CKO_00570
Ferredoxin-type protein NapG (periplasmic nitrate reductase)
CKO_00571
Polyferredoxin NapH (periplasmic nitrate reductase)
CKO_00572
Nitrate reductase cytochrome c550-type subunit
CKO_00573
Cytochrome c-type protein NapC
CKO_00574
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Position: -267
Score: 3.7
Sequence: TTGTTGATAATTAA
Locus tag: CKO_02729
Name: cyoA
Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: CKO_02730
Name: cyoB
Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: CKO_02731
Name: cyoC
Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: CKO_02732
Name: cyoD
Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: CKO_02733
Name: cyoE
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
CKO_02729
cyoA
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
CKO_02730
cyoB
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
CKO_02731
cyoC
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
CKO_02732
cyoD
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
CKO_02733
cyoE
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Position: -25
Score: 4.4
Sequence: TTGTTAAACAACAA
Locus tag: CKO_03697
Name: dcuA
Funciton: C4-dicarboxylate transporter DcuA
CKO_03697
dcuA
C4-dicarboxylate transporter DcuA
Position: -43
Score: 3.7
Sequence: TTAATGAAAATCGA
Locus tag: CKO_02124
Name: ssuE
Funciton: FMN reductase (EC 1.5.1.29)
Locus tag: CKO_02125
Name: ssuA
Funciton: Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
Locus tag: CKO_02126
Name: ssuD
Funciton: Alkanesulfonate monooxygenase (EC 1.14.14.5)
Locus tag: CKO_02127
Name: ssuC
Funciton: Alkanesulfonates transport system permease protein
Locus tag: CKO_02128
Name: ssuB
Funciton: Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB
CKO_02124
ssuE
FMN reductase (EC 1.5.1.29)
CKO_02125
ssuA
Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
CKO_02126
ssuD
Alkanesulfonate monooxygenase (EC 1.14.14.5)
CKO_02127
ssuC
Alkanesulfonates transport system permease protein
CKO_02128
ssuB
Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB
Position: -42
Score: 3.3
Sequence: TTGCTTATTAATAA
Locus tag: CKO_01926
Name: pepT
Funciton: Tripeptide aminopeptidase (EC 3.4.11.4)
CKO_01926
pepT
Tripeptide aminopeptidase (EC 3.4.11.4)
Position: -209
Score: 5.6
Sequence: TTGATTTAAATCAA
Position: -156
Score: 5.1
Sequence: TTGTTTTACATCAA
Locus tag: CKO_00204
Name: ung
Funciton: Uracil-DNA glycosylase (EC 3.2.2.27)
CKO_00204
ung
Uracil-DNA glycosylase (EC 3.2.2.27)
Position: -337
Score: 4
Sequence: TTGATTACTATCTA
Locus tag: CKO_00756
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
CKO_00756
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -25
Score: 4.4
Sequence: TTGTTAAACAACAA
Locus tag: CKO_03697
Name: dcuA
Funciton: Anaerobic C4-dicarboxylate transporter
CKO_03697
dcuA
Anaerobic C4-dicarboxylate transporter
Position: -83
Score: 3.8
Sequence: TCGCTTTACCTCAA
Locus tag: CKO_03828
Name: soxS
Funciton: AraC-family transcriptional regulator
CKO_03828
soxS
AraC-family transcriptional regulator
Position: -17
Score: 3.4
Sequence: TTGAGGTAAAGCGA
Locus tag: CKO_03827
Name: soxR
Funciton: redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
CKO_03827
soxR
redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
Position: -32
Score: 4.3
Sequence:
Locus tag: CKO_01582
Name: null
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: CKO_01583
Name: ynfG
Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: CKO_01584
Name: ynfH
Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
Locus tag: CKO_01585
Name: ynfI
Funciton: Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
CKO_01582
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
CKO_01583
ynfG
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
CKO_01584
ynfH
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
CKO_01585
ynfI
Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
Position: -114
Score: 3.7
Sequence: TTGACATGGATTAA
Locus tag: CKO_01581
Name: null
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
CKO_01581
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Position: -83
Score: 3.8
Sequence: TTGATGTAAAGTAA
Locus tag: CKO_01409
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein
CKO_01409
fnr
Fumarate and nitrate reduction regulatory protein
Position: -183
Score: 4.2
Sequence: TTGACAAAAATCAT
Locus tag: CKO_04518
Name: tdcA
Funciton: Threonine catabolism transcriptional regulator TdcA, LysR family
Locus tag: CKO_04517
Name: tdcB
Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: CKO_04516
Name: tdcC
Funciton: L-threonine transporter, anaerobically inducible
Locus tag: CKO_04515
Name: tdcD
Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: CKO_04514
Name: tdcE
Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: CKO_04513
Name: yhaR
Funciton: Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
Locus tag: CKO_04512
Name: null
Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
CKO_04518
tdcA
Threonine catabolism transcriptional regulator TdcA, LysR family
CKO_04517
tdcB
Threonine dehydratase, catabolic (EC 4.3.1.19)
CKO_04516
tdcC
L-threonine transporter, anaerobically inducible
CKO_04515
tdcD
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
CKO_04514
tdcE
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
CKO_04513
yhaR
Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
CKO_04512
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
Position: -291
Score: 5.1
Sequence: TTGATATATGTCAA
Locus tag: CKO_03387
Name: arcA
Funciton: Aerobic respiration control protein arcA
CKO_03387
arcA
Aerobic respiration control protein arcA
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