Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Citrobacter koseri ATCC BAA-895

Properties
Regulator type: Transcription factor
TF locus tag: CKO_00584
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 74
- Operons 25
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -166
Score: 5.2
Sequence: TACCCCTTTGGGGGTA
Locus tag: CKO_02177
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
CKO_02177
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Position: -158
Score: 4.6
Sequence: TCCTCCTTAAGGGGTA
Locus tag: CKO_01301
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: CKO_01302
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: CKO_01303
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: CKO_01304
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
CKO_01301
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
CKO_01302
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
CKO_01303
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
CKO_01304
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -362
Score: 4.7
Sequence: TAACTATAAAGGAGTA
Locus tag: CKO_03748
Name: dcuB
Funciton: C4-dicarboxylate transporter
Locus tag: CKO_03749
Name: fumB
Funciton: Fumarate hydratase class I, (EC 4.2.1.2)
CKO_03748
dcuB
C4-dicarboxylate transporter
CKO_03749
fumB
Fumarate hydratase class I, (EC 4.2.1.2)
Position: -111
Score: 4.4
Sequence: TAACTCTTTGGGATTA
Locus tag: CKO_01699
Name: ydhY
Funciton: Predicted oxidoreductase, FeS cluster subunit
Locus tag: CKO_01698
Name: ydhV
Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01697
Name: ydhW
Funciton: Predicted oxidoreductase subunit
Locus tag: CKO_01696
Name: ydhX
Funciton: Predicted oxidoreductase, FeS cluster subunit
Locus tag: CKO_01695
Name: ydhU
Funciton: Predicted oxidoreductase, cytochrome b subunit
Locus tag: CKO_01694
Name: ydhT
Funciton: Predicted oxidoreductase subunit
CKO_01699
ydhY
Predicted oxidoreductase, FeS cluster subunit
CKO_01698
ydhV
Predicted oxidoreductase subunit
CKO_01697
ydhW
Predicted oxidoreductase subunit
CKO_01696
ydhX
Predicted oxidoreductase, FeS cluster subunit
CKO_01695
ydhU
Predicted oxidoreductase, cytochrome b subunit
CKO_01694
ydhT
Predicted oxidoreductase subunit
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: CKO_00330
Name: talA
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CKO_00329
Name: tktB
Funciton: Transketolase (EC 2.2.1.1)
CKO_00330
talA
Transaldolase (EC 2.2.1.2)
CKO_00329
tktB
Transketolase (EC 2.2.1.1)
Position: -78
Score: 3.9
Sequence: TGACCCGAAAGGGTTA
Locus tag: CKO_03623
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
CKO_03623
dnrN
Nitric oxide-dependent regulator DnrN
Position: -612
Score: 4.6
Sequence: TACCCCAATCGGGGTA
Locus tag: CKO_00568
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: CKO_00569
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: CKO_00570
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: CKO_00571
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: CKO_00572
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: CKO_00573
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: CKO_00574
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
CKO_00568
napD
Periplasmic nitrate reductase component NapD
CKO_00569
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
CKO_00570
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
CKO_00571
napH
Periplasmic nitrate reductase, polyferredoxin NapH
CKO_00572
napB
Nitrate reductase cytochrome c550-type subunit
CKO_00573
napC
Cytochrome c-type protein NapC
CKO_00574
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Position: -55
Score: 4.5
Sequence: TACTCCATTGTAGGTA
Locus tag: CKO_01333
Name: ompW
Funciton: Outer membrane protein W precursor
CKO_01333
ompW
Outer membrane protein W precursor
Position: -234
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: CKO_01824
Name: yeaR
Funciton: Conserved hypothetical protein
Locus tag: CKO_01823
Name: yoaG
Funciton: Conserved hypothetical protein
CKO_01824
yeaR
Conserved hypothetical protein
CKO_01823
yoaG
Conserved hypothetical protein
Position: -93
Score: 4.8
Sequence: TACCTATAAGGGGTTA
Position: -20
Score: 3.8
Sequence: TAACTATAATGGAGTG
Locus tag: CKO_01581
Name: ynfE
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: CKO_01582
Name: ynfF
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: CKO_01583
Name: ynfG
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: CKO_01584
Name: ynfH
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: CKO_01585
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
CKO_01581
ynfE
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
CKO_01582
ynfF
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
CKO_01583
ynfG
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
CKO_01584
ynfH
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
CKO_01585
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
Position: -216
Score: 4.6
Sequence: TACTCAGAAGTGAGTA
Locus tag: CKO_01318
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
CKO_01318
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -330
Score: 4.6
Sequence: TAACTCATAATGGGTA
Locus tag: CKO_03341
Name: fixA
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: CKO_03340
Name: fixB
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: CKO_03339
Name: fixC
Funciton: Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
Locus tag: CKO_03338
Name: fixX
Funciton: Predicted ferredoxin involved in anaerobic carnitine metabolism
CKO_03341
fixA
Flavoprotein involved in anaerobic carnitine metabolism
CKO_03340
fixB
Flavoprotein involved in anaerobic carnitine metabolism
CKO_03339
fixC
Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
CKO_03338
fixX
Predicted ferredoxin involved in anaerobic carnitine metabolism
Position: -90
Score: 4
Sequence: TAACCTCAATTGGGTA
Locus tag: CKO_02372
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: CKO_02371
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: CKO_02370
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
CKO_02372
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
CKO_02371
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
CKO_02370
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -249
Score: 4.4
Sequence: TGCCCCTTAGTGAGTA
Position: -139
Score: 4.5
Sequence: TAACTCGTTATAGGTA
Locus tag: CKO_01297
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: CKO_01296
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
CKO_01297
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
CKO_01296
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -392
Score: 4.2
Sequence: TACCTATAACGAGTTA
Position: -282
Score: 4.5
Sequence: TACTCACTAAGGGGCA
Locus tag: CKO_01299
Name: narK
Funciton: Nitrate/nitrite antiporter
CKO_01299
narK
Nitrate/nitrite antiporter
Position: -30
Score: 4.6
Sequence: TACCTCGAAGGGAGCA
Locus tag: CKO_00079
Name: atpI
Funciton: ATP synthase maturation
Locus tag: CKO_00078
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: CKO_00077
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: CKO_00076
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: CKO_00075
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
CKO_00079
atpI
ATP synthase maturation
CKO_00078
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
CKO_00077
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
CKO_00076
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
CKO_00075
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Position: -109
Score: 4.3
Sequence: TACCTCCCTGGCGGTA
Locus tag: CKO_02206
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: CKO_02207
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
CKO_02206
hcp
Hydroxylamine reductase (EC 1.7.-.-)
CKO_02207
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)
Position: -105
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: CKO_00500
Name: yfbV
Funciton: Predicted membrane protein
Locus tag: CKO_00501
Name: yfbU
Funciton: Conserved hypothetical protein
Locus tag: CKO_00502
Name: yfbT
Funciton: Predicted phosphatase
Locus tag: CKO_00503
Name: yfbS
Funciton: Predicted transport protein
CKO_00500
yfbV
Predicted membrane protein
CKO_00501
yfbU
Conserved hypothetical protein
CKO_00502
yfbT
Predicted phosphatase
CKO_00503
yfbS
Predicted transport protein
Position: -130
Score: 4.4
Sequence: TACCCATTATGAGTTA
Locus tag: CKO_03343
Name: null
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: CKO_03344
Name: caiA
Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: CKO_03345
Name: caiB
Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: CKO_03346
Name: caiC
Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: CKO_03347
Name: caiD
Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: CKO_03348
Name: caiE
Funciton: Carnitine operon protein CaiE
CKO_03343
L-carnitine/gamma-butyrobetaine antiporter
CKO_03344
caiA
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
CKO_03345
caiB
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
CKO_03346
caiC
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
CKO_03347
caiD
Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
CKO_03348
caiE
Carnitine operon protein CaiE
Position: -49
Score: 3.8
Sequence: TGCTCAGAATTGAGTA
Locus tag: CKO_04614
Name: arcB
Funciton: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
CKO_04614
arcB
Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Position: -118
Score: 4.2
Sequence: TACCATTTTATGAGTA
Locus tag: CKO_04064
Name: norV
Funciton: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
Locus tag: CKO_04065
Name: norW
Funciton: Nitric oxide reductase reductase, FlRd-NAD dependent (EC 1.18.1.-)
CKO_04064
norV
Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
CKO_04065
norW
Nitric oxide reductase reductase, FlRd-NAD dependent (EC 1.18.1.-)
Position: -180
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: CKO_03814
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
CKO_03814
nrfA
Nitrite reductase, cytochrome c(552)
Position: -101
Score: 5.2
Sequence: TACCTCTTAAGGAGTA
Locus tag: CKO_04789
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: CKO_04790
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: CKO_04791
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: CKO_04792
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
CKO_04789
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
CKO_04790
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
CKO_04791
nirC
Nitrite transporter, FNT family
CKO_04792
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -60
Score: 4.7
Sequence: TACCTATAAAGGAGCA
Locus tag: CKO_03678
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: CKO_03679
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: CKO_03680
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: CKO_03681
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
CKO_03678
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
CKO_03679
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
CKO_03680
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
CKO_03681
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
Position: -204
Score: 4.2
Sequence: TACTCCCAGGGGAGTA
Locus tag: CKO_03260
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: CKO_03259
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: CKO_03258
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
CKO_03260
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
CKO_03259
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
CKO_03258
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
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