Regulon of FadR in Citrobacter koseri ATCC BAA-895

Properties
Regulator type:	Transcription factor
TF locus tag:	CKO_01189
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Enterobacteriales
Statistics of regulated genes:
- Genes	13
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -40 Score: 4.3 Sequence: AACTGGTCGTACCACAA Locus tag: CKO_01137 Name: yebV Funciton: hypothetical protein
	CKO_01137	yebV	hypothetical protein
Position: -84 Score: 3.8 Sequence: CACTCCTCCGATCAGTG Locus tag: CKO_03903 Name: iclR Funciton: Acetate operon transcriptional repressor, IclR family
	CKO_03903	iclR	Acetate operon transcriptional repressor, IclR family
Position: -39 Score: 4.5 Sequence: AAGTGGTCAGACCTCCT Locus tag: CKO_02965 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	CKO_02965	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -46 Score: 4.9 Sequence: AACTCATCCGACCACAT Locus tag: CKO_04487 Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
	CKO_04487	fadH	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -43 Score: 5.1 Sequence: ATCAGGTCAGACCACTT Locus tag: CKO_00448 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: CKO_00449 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	CKO_00448	fadI	FadI component of anaerobic fatty acid oxidation complex
	CKO_00449	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -42 Score: 5.1 Sequence: ATCTGGTATGACCAGAT Locus tag: CKO_00188 Name: fadB Funciton: fatty oxidation complex, alpha subunit FadB Locus tag: CKO_00187 Name: fadA Funciton: fatty oxidation complex, beta subunit FadA
	CKO_00188	fadB	fatty oxidation complex, alpha subunit FadB
	CKO_00187	fadA	fatty oxidation complex, beta subunit FadA
Position: -120 Score: 4.2 Sequence: AGCTGGTCAGACCTATA Position: -96 Score: 4.4 Sequence: CACTGGTCTGATTTCTC Locus tag: CKO_00446 Name: fadL Funciton: Long-chain fatty acid transport protein
	CKO_00446	fadL	Long-chain fatty acid transport protein
Position: -74 Score: 4.5 Sequence: AACTGATCGGACTTGTT Locus tag: CKO_02114 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	CKO_02114	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -59 Score: 4.4 Sequence: ATGAGGTCATACCAGTT Locus tag: CKO_02717 Name: fadM Funciton: Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-)
	CKO_02717	fadM	Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-)
Position: 9 Score: 3.8 Sequence: GTCTGGTATGATGAGTG Locus tag: CKO_01189 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	CKO_01189	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -83 Score: 3.3 Sequence: GGCTGATCGGACTTGTT Locus tag: CKO_00462 Name: fabB Funciton: 3-oxoacyl-(acyl carrier protein) synthase
	CKO_00462	fabB	3-oxoacyl-(acyl carrier protein) synthase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of FadR in Citrobacter koseri ATCC BAA-895

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --