Regulon of MetR in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_04215 |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Regulog: | MetR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Locus Tag | Name | Function | |
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Position: -13
Score: 4.9 Sequence: GTGAAGGACTTTCAT
Locus tag: CKO_00170
Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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metR
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
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Position: -209
Score: 4.6 Sequence: GTGAAAAATCTGCAT
Locus tag: CKO_00237
Name: glyA Funciton: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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glyA
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Serine hydroxymethyltransferase (EC 2.1.2.1)
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Position: -180
Score: 4.1 Sequence: ATGAAAAAGCGTCAC
Position: -149
Score: 4.2 Sequence: GTGAATTTATTTCAA
Position: -129
Score: 3.6 Sequence: ATGAATTTTTCTCGG
Locus tag: CKO_01563
Name: metE2 Funciton: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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metE2
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Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
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Position: -81
Score: 4.1 Sequence: ATGCGCGTCTTTCAC
Locus tag: CKO_04036
Name: luxS Funciton: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
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luxS
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S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
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Position: -50
Score: 4.3 Sequence: CTGAACATGTCTCAT
Locus tag: CKO_03902
Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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metH
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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Position: -125
Score: 4.6 Sequence: ATGCAGATTTTTCAC
Locus tag: CKO_00235
Name: hmp Funciton: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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hmp
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
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Position: -250
Score: 4.9 Sequence: ATGAAAGTCCTTCAC
Locus tag: CKO_00171
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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metE
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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Position: -111
Score: 4.8 Sequence: GTGAAACTTTCTCAC
Locus tag: CKO_03907
Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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metA
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Homoserine O-succinyltransferase (EC 2.3.1.46)
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Position: -156
Score: 4.4 Sequence: TTGAATTTTTTTCAC
Position: -136
Score: 4.2 Sequence: CTGAGTATTCCTCAC
Position: 0
Score: 4.6 Sequence: ATGAGCTTTTTTCAC
Locus tag: CKO_03051
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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metF
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
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Position: -182
Score: 4.2 Sequence: ATGAATATGACTCAT
Locus tag: CKO_02940
Name: PF08908 Funciton: Protein of unknown function DUF1852
Locus tag: CKO_02941
Name: metE2-2 Funciton: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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PF08908
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Protein of unknown function DUF1852
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metE2-2
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Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |