Regulon of AraC in Citrobacter koseri ATCC BAA-895

Properties
Regulator type:	Transcription factor
TF locus tag:	CKO_03318
Regulator family:	AraC
Regulation mode:	activator (repressor)
Biological process:	Arabinose utilization
Effector:	Arabinose
Regulog:	AraC - Enterobacterales
Statistics of regulated genes:
- Genes	11
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 56 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - AraC
By effector - Arabinose
By pathway - Arabinose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -278 Score: 8.1 Sequence: TCAGGCAGGATCCGCTA-(4)-TATGGATTAAAATGCTA Position: -204 Score: 8.3 Sequence: TGTGGACATTTCTGTCG-(4)-TATAGACACTTTTGTTA Locus tag: CKO_03318 Name: araC Funciton: Arabinose operon regulatory protein, AraC family
	CKO_03318	araC	Arabinose operon regulatory protein, AraC family
Position: -284 Score: 8.3 Sequence: CAAGGATTTGCTGGCTG-(4)-TATGGACTAATCTGCTA Position: -231 Score: 6.3 Sequence: TCTGACAAAACCTTCTT-(4)-TATGTCATTTTCCGCTG Position: -210 Score: 7.1 Sequence: TATGTCATTTTCCGCTG-(4)-TATGTACGCAATTACTG Locus tag: CKO_01050 Name: araF Funciton: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) Locus tag: CKO_01051 Name: araG Funciton: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) Locus tag: CKO_01052 Name: araH Funciton: L-arabinose transport system permease protein (TC 3.A.1.2.2)
	CKO_01050	araF	L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
	CKO_01051	araG	L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)
	CKO_01052	araH	L-arabinose transport system permease protein (TC 3.A.1.2.2)
Position: -189 Score: 7.5 Sequence: TGACAGGAAAATCCATA-(4)-CAGCTGCTTTTTTCATA Locus tag: CKO_03603 Name: ytfQ Funciton: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor Locus tag: CKO_03602 Name: ytfR Funciton: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) Locus tag: CKO_03601 Name: ytfT Funciton: Galactose/arabinose ABC transport system, permease protein YtfT Locus tag: CKO_03600 Name: yjfF Funciton: Galactose/arabinose ABC transport system, permease protein YjfF
	CKO_03603	ytfQ	Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor
	CKO_03602	ytfR	Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
	CKO_03601	ytfT	Galactose/arabinose ABC transport system, permease protein YtfT
	CKO_03600	yjfF	Galactose/arabinose ABC transport system, permease protein YjfF
Position: -174 Score: 8.3 Sequence: TAACAAAAGTGTCTATA-(4)-CGACAGAAATGTCCACA Position: -100 Score: 8.1 Sequence: TAGCATTTTAATCCATA-(4)-TAGCGGATCCTGCCTGA Locus tag: CKO_03319 Name: araB Funciton: Ribulokinase (EC 2.7.1.16) Locus tag: CKO_03320 Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) Locus tag: CKO_03321 Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
	CKO_03319	araB	Ribulokinase (EC 2.7.1.16)
	CKO_03320	araA	L-arabinose isomerase (EC 5.3.1.4)
	CKO_03321	araD	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD